Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1159 ATGTTCAAGTCGGCGAGGTGGAGGAGTGAGAAGAACAGGATCAAGGCTGAGTTCAAATTGCAATTCTGTGCAACGCAGATTTCGGAATTTGGTGGGGATTCATTGACGATATCTGTGATTCCTGATGATGTGGGAAAGCCGACGCTGAGACTGGAGAAGGCCACAGTGCGAGGAGGAAAATGTCGGTGGGAGAATCCTGCTTATGTAACAGTTAAGTTTGATGTAGACCAGAAAACTGGAAAGTTCACCGAGAAAATCTACCATTTTCGAGTCTCTACGGGATTGACCAAAGCTGGTTTACTTGGTGAAGTTTCTATTGATTTTGCTAAATATGCTGAGACCACCAAGCCTTTCTCTGCTTCTCTTCCCCTCCAGAATTCAAATTCTGCAGTTTTGCATATTTGGATACAGAGGATTCAGGAAGATGCTGATCAAAGAGATGTGGGAGAATATGAGGGTTTAAAAACTAGATCTCAAGATGAGAGCTTAAGCAGCTACTTGAACAACGAGGATGTAAACAAGAACAGTCAAACTGAAGATGGGTTAAGTGATGAAGCTGAAAGAAATGGTGAAACGAATGGTGATCATAGAACATCAAGTGGATCTGACATTACTCTATCAAGTTATGAGAGCAGCTCTGGACTTGAAAGTCCAATAGAAAATGGGATTAGGAATAATATCCATCAGCAACCTAATGGCTTTCTTTCACCATTAAACCATGCCCCGGTTTCTCACAAATCACCTGCTCGTGAAGAGAATCTGACGTTCCCGTGGAAGTGGTCGATGCAATCTGATCATGTATCAACAACTGATGATTCGGGAGTCAATGGCCTTGTATTAGGAAGGTCCAGAAAGGAAGCTGATATTGAGATTGAGGAACTAAAGACTGAGCTTTCTGTTTTGACCAGACGAGCAGACATGTCGGATATGGAATTGCAGACGCTTCGAAAACAGATTGCGAAAGAAAATAAGAGGAGTCAGGATCTTATGGGTGAGATTTCTAGCTTGAAAGCAGAGAGAGATGAATGGAGAGCAGAATGTGAGAAGTTGAAGGGCTTCCAAAGGCACGTGGATGATGCAAAAGTTAAAAACAAGTTGCAGTTTGAAGGAGGAGATATGCGGGCTCTGTTAGAAGAAATGAGACAAGAACTGAATTATGAGAAAGACTTGAATGCCAATCTTCGGTTACAGCTACAGAAAACGCAAGAGTCAAACAACGAGTTAATTTTAGCAGTACAAGATCTTGAGGAGATGCTGGAACATAAGAACTGTGAAATGTCAGATCTTCATACTGAGTCAGAGTCCAAGAAGGCTGAAGTGATGAAAATTACTTGTTCAAAATGTCAAATAGAAGAGGATGAGGAGCTAAAAGCACTTGAAGATCTTGTGAATGATCAAAAGAATGATAGAAAAGCATATATGCTGGAGCAAAAGGTGATGGAACTCTACAATGAAATAGAATTGCATATGCGAGATAAGGATGAGGTAGCTATGCAAATGGAGCTGCTTGCACTTGATTATGAGATATTGAAACAGGGAAACCATGATCTTTCCCGCAAACTGGAGCAAAGTCAACTTCAGGAGCAATTGAAGATACAGCATGGGTGCTCCTCTTCCACTGCTACGATAAATGAGCTTGAAAACAAGATTGAAGGTCTCGAAAATGAACTGAAGCAGCAGTCGGCTGAATATTCTAATACTTTGGCTACTATCAGGGAACTTCAATCCCATGTCAGAAGTTTGGAGGAAGAACTTGAGAAGCAGGGGCAAGATTTCGAAGCCGACTTGGAGGCAATGACGCTTTCCAAGGTTGAGCAAGAGCAAAGGGCTATCCGAGCAGAAGAAGCTTTAAGAAAAATGAGGTTGAGAAATGCTCATACTGCAGAAAAGCTTCAGGAGGAATTTGGAAGACTGTCCAAGCAGATGGCTTCTACATTTGAGGCAAATGAGAATGTAGCTTTGAAAGCACTAGCAGAAGCTAGTGAGCTTCGCTCACAGAGAAGTCACTTGGAAGAAGCTCTCCAGAAAGCAAATGAAGAACTACGATCTGTGAGAGAAAATTATGAGGAAAAATTGCAGGAGCTTTCTCACCAAATCAAGAGCAACTCAAGTCAGATAGAACAAATGATATCAGAACTTGAGACCAAGTCCCAACAACTCGAACATCAGAAGAAGAACGAGGATATGAAGTCTGAATCTTTCTCTCAGGAAATCCAAATTCTAAAATCGGAGATTGACCGACTCATTGGAGAGAATAGTAATCTTAAAGAACAAGCTGGACAGGTAGAGACAATGAGAGTAGAATTAGATCAAATGAAGACATTAGTTAGAGAAACCGAGAAGCTAATCCAAACAAGAAATACAGAAAGAAATGAGCTGGAGAGTACAGTTGTATTGGCGAAGAAAGAATCGGATACATTGCTGGATGAGTTGGAGAAATTGAGGAATGTGAACGACGAAAAGGAGACTTTGCTAGGACTTCTACAATCGGAATTGCAGAAGCTCAAAGTTGAATGCAATGACTTAAAACATTCTTTGACTGAGGATGAGATAGAGAAAGAGAAACTTAGAAAGCAGGTATTGCAACTGAAAGGTGAACTGAAGAAGGAGGAGGCATGTAATAATTCTGAGAAAAAACTCAAGCATAACAATGGACGTGTGGCAACTATTGGTGGAAACAAAGCTGTTCCAAAACCAAAATTAAATCCAGTTCCTCATGGCTCTGCTGAAGTTGCAAATTTGAGGGAGAAAATCAAAATGCTCGAGAGACAGATAAAATTAAATGAAAATGCCTTAGAAACATCAGAGAATTCATTTCTCCAAAAGGAAGAAGAATTCTGCAATAGAATCCTGGAGTTGGAGAACAGACTGGAAGAACTAAACCATTTGGAAACATCTCAAAAGGTAACCGACGGTAGAAACGACACTGCTTCACATGGGGGAATATCCGAGGAGACGAGAAAGACACCGGACAACTTAAGCAATAAAGTATCAGTCAATAGCAACAAGAATTCATTTGAAACAGCACCGAAACTATCCACGGTTGGCGATAGCAATGGAAACCTCGATAAACTGTTGACAGAATTGTCAACATTAAAAGAGAAGAACCAATCAATGGAAAGTGAACTGAAGGATATGCAAGAGAGATACTCAGAGATAAGTCTTAAGTTTGCAGAGGTAGAAGGCTGGCCGGCTGCAGCAGCATTCCACAACTCCTATAAATTCACATCTCCTCTTACAAACCTTTCCTCAGTTCACATTGGAATCGAAGAAGTATCTCTGTTTCCGGTCAAAAGCAGAGCAGGGAGGAATATTCCGATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCCCTGCCCTTGGCGAGGATAAAGAAGATCATGAAGAAATCCGGTGAGGAGGTGAAGATGATCTCCGGCGAGGCTCCCATCGTCTTCTCGAAGGCCTGTGAACTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATCGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTGGCTTCCGCCATTTTGGCCACTGATGTTTTCGATTTTCTCATCGGATTGATCTTCAATGAAACAGCCGCCGCTGCCGGCGACCTTGTTGAAACTGAAACTATGTCCATTCCTTGCTGA 3672 41.99 MFKSARWRSEKNRIKAEFKLQFCATQISEFGGDSLTISVIPDDVGKPTLRLEKATVRGGKCRWENPAYVTVKFDVDQKTGKFTEKIYHFRVSTGLTKAGLLGEVSIDFAKYAETTKPFSASLPLQNSNSAVLHIWIQRIQEDADQRDVGEYEGLKTRSQDESLSSYLNNEDVNKNSQTEDGLSDEAERNGETNGDHRTSSGSDITLSSYESSSGLESPIENGIRNNIHQQPNGFLSPLNHAPVSHKSPAREENLTFPWKWSMQSDHVSTTDDSGVNGLVLGRSRKEADIEIEELKTELSVLTRRADMSDMELQTLRKQIAKENKRSQDLMGEISSLKAERDEWRAECEKLKGFQRHVDDAKVKNKLQFEGGDMRALLEEMRQELNYEKDLNANLRLQLQKTQESNNELILAVQDLEEMLEHKNCEMSDLHTESESKKAEVMKITCSKCQIEEDEELKALEDLVNDQKNDRKAYMLEQKVMELYNEIELHMRDKDEVAMQMELLALDYEILKQGNHDLSRKLEQSQLQEQLKIQHGCSSSTATINELENKIEGLENELKQQSAEYSNTLATIRELQSHVRSLEEELEKQGQDFEADLEAMTLSKVEQEQRAIRAEEALRKMRLRNAHTAEKLQEEFGRLSKQMASTFEANENVALKALAEASELRSQRSHLEEALQKANEELRSVRENYEEKLQELSHQIKSNSSQIEQMISELETKSQQLEHQKKNEDMKSESFSQEIQILKSEIDRLIGENSNLKEQAGQVETMRVELDQMKTLVRETEKLIQTRNTERNELESTVVLAKKESDTLLDELEKLRNVNDEKETLLGLLQSELQKLKVECNDLKHSLTEDEIEKEKLRKQVLQLKGELKKEEACNNSEKKLKHNNGRVATIGGNKAVPKPKLNPVPHGSAEVANLREKIKMLERQIKLNENALETSENSFLQKEEEFCNRILELENRLEELNHLETSQKVTDGRNDTASHGGISEETRKTPDNLSNKVSVNSNKNSFETAPKLSTVGDSNGNLDKLLTELSTLKEKNQSMESELKDMQERYSEISLKFAEVEGWPAAAAFHNSYKFTSPLTNLSSVHIGIEEVSLFPVKSRAGRNIPMRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAAAAGDLVETETMSIPC 1223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23808406 23815803 + CrPI670011_07g011590.1 Cre07g1159 503740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1159 1223 MobiDBLite consensus disorder prediction 177 194 - -
Cre07g1159 1223 Coils Coil 943 963 - -
Cre07g1159 1223 Coils Coil 762 782 - -
Cre07g1159 1223 Coils Coil 797 873 - -
Cre07g1159 1223 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 144 IPR019448 -
Cre07g1159 1223 Coils Coil 377 432 - -
Cre07g1159 1223 MobiDBLite consensus disorder prediction 195 237 - -
Cre07g1159 1223 MobiDBLite consensus disorder prediction 970 1019 - -
Cre07g1159 1223 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1062 - -
Cre07g1159 1223 Coils Coil 603 623 - -
Cre07g1159 1223 Coils Coil 449 476 - -
Cre07g1159 1223 Coils Coil 536 591 - -
Cre07g1159 1223 Gene3D Histone, subunit A 1115 1202 IPR009072 GO:0046982(InterPro)
Cre07g1159 1223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1125 1189 IPR003958 -
Cre07g1159 1223 Coils Coil 911 938 - -
Cre07g1159 1223 Coils Coil 284 346 - -
Cre07g1159 1223 ProSiteProfiles C2 NT-type domain profile. 6 140 IPR019448 -
Cre07g1159 1223 SUPERFAMILY Histone-fold 1120 1198 IPR009072 GO:0046982(InterPro)
Cre07g1159 1223 MobiDBLite consensus disorder prediction 992 1019 - -
Cre07g1159 1223 Coils Coil 660 758 - -
Cre07g1159 1223 Coils Coil 1022 1056 - -
Cre07g1159 1223 MobiDBLite consensus disorder prediction 158 176 - -
Cre07g1159 1223 MobiDBLite consensus disorder prediction 152 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1159 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1159 Cre-Chr7:23808406 Cre09g2230 Cre-Chr9:41469270 1.00E-197 dispersed
Cre07g1159 Cre-Chr7:23808406 Cre10g2078 Cre-Chr10:35466640 4.90E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g345 Blo02g01105 Blo03g00203 Bda06g00083 . Bpe05g00637 Bpe07g00115 . Bma14g00613 . Cmo16g00637 Cma02g01064 Cma15g01215 Car02g00807 Car15g01096 . Cpe14g00498 Cpe05g00319 . . . . . . . Cla07g00764 Cam07g0819 Cec07g0878 Cco07g0854 Clacu07g0797 Cmu07g0804 Cre07g1159 Cone8ag0317 Cone12ag0316 . Cone9ag0766 . Csa05g00299 Chy09g01206 . . . . . . . Bma05g00813 Bma12g00090 . Cmo02g01506 Cmo15g01279 Cma06g00414 Cma16g00588 . . . Cpe13g00164 Bhi12g00228 . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 Lsi09g00280 . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001416 2 3 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 5 4 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54024 PF10358 NT-C2 2.10E-14 CL0154 Cre TF