Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1163 ATGGTTCAATCGATTGCAGCAGCTTCTCTTTTTGGCCATCAGCTGCTATGTGGAGGAACTTTTGTTAAGGACACGTCCTACAAGAGGAAGAACAGCTGGTTCCCAACATCCAAATTTGTTGGTAAGAGGCTGATTTCGTCTCCCCCAACTTCTGGATTGAAAGTGGATCGATCAGCACTTTTGGCAATTAAGGCTTTATCACTGGAGGTGACAAAAGAGGCGTATTCATTCAGAGAGGATAGAATACCGAAGGATTGGAACTATGATATTGATGCTGGCTTTGATCGAAAGCCAGGTTTATGGCCTCCTGAAAACAAAGCAGATAATCCTTCATTACAGAATCCATTGCTTCGACAAGAAAGAATGGGGTGTGGTTGGTTGGGTGCCATATTTGAGTGGGAGGGTGTGTTGATTGAGGACAATCCTGAAATTGAGAAGCAGGCCTGGTTAGCTCTTTCTCAGGAAGAAGGAAAATCACCTCCCCCAGCTTTTATCCTCAGAAGAATAGAGGGGATGAAGAATGAACAGGCAATTTCTGAAGTCCTTTGCTGGTCAAGAGATCCTGCTCAGTTGAGAAGAATGGCTGCTAGGAAGGAGGAAATCTATCAGGCATTGCAGGGGGGAGTTTACAGACTAAGAGCAGGGTCAAAAGAGTTTGTGAATATCCTGATGCATTACAAGATTCCCATGGCACTGGTTTCAACCCGTCCTAGAGAAACTCTGGAGTCGGCCATGGGAAAGATCGGTATTGATGGCGATTTCAATGTGATTATAGCTGCGGAGGATGTTCACAGGGGAAAGCCTGATCCAGAAATGTTCGTCTATGCAGCACAGCTTTTGAACTTCATTCCTGAAAGGTGCATTGTGTTTGGGAATTCAAACCAAACTGTTGAGGCTGCTCATGATGCTCGGATGAAGTGTGTGGCAGTTGCAAGCAAGCATCCTGTTTATGAACTTGGGGCTGCGGACTTGGTGGTGAGGCGTCTTGATGAGCTGACAGTCGTCGATTTGAAGAATCTCGCCGATATTGAGTCCTCTGAATTTGGTTCTGGAGAGCCAGAGTTGGAGATGGAGTTGGAGGAAGATGATGACTCTCCATCAACCATGACAGCAGTTGATGATATTTTCTGGTGA 1134 45.68 MVQSIAAASLFGHQLLCGGTFVKDTSYKRKNSWFPTSKFVGKRLISSPPTSGLKVDRSALLAIKALSLEVTKEAYSFREDRIPKDWNYDIDAGFDRKPGLWPPENKADNPSLQNPLLRQERMGCGWLGAIFEWEGVLIEDNPEIEKQAWLALSQEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRDPAQLRRMAARKEEIYQALQGGVYRLRAGSKEFVNILMHYKIPMALVSTRPRETLESAMGKIGIDGDFNVIIAAEDVHRGKPDPEMFVYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPVYELGAADLVVRRLDELTVVDLKNLADIESSEFGSGEPELEMELEEDDDSPSTMTAVDDIFW 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23916709 23917842 - CrPI670011_07g011630.1 Cre07g1163 503744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1163 377 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 1 377 - -
Cre07g1163 377 SUPERFAMILY HAD-like 129 332 IPR036412 -
Cre07g1163 377 MobiDBLite consensus disorder prediction 349 368 - -
Cre07g1163 377 Gene3D - 129 327 IPR023214 -
Cre07g1163 377 NCBIfam HAD-IA family hydrolase 245 310 IPR006439 -
Cre07g1163 377 Gene3D Putative phosphatase; domain 2 139 212 IPR023198 -
Cre07g1163 377 MobiDBLite consensus disorder prediction 347 373 - -
Cre07g1163 377 CDD HAD_BPGM-like 189 312 - -
Cre07g1163 377 Pfam Haloacid dehalogenase-like hydrolase 134 310 IPR041492 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1163 K22912 - - csv:101210862 723.391
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g323 . . Bda06g00102 . . Bpe07g00109 . . . Cmo16g00641 . . . . . Cpe14g00503 . . . . . . . . Cla07g00768 Cam07g0825 Cec07g0883 Cco07g0860 Clacu07g0804 Cmu07g0809 Cre07g1163 . . Cone6ag0778 Cone9ag0783 . . . Cme07g01627 . . . . . . . Bma12g00076 . . . . Cma16g00591 . . . . . . . . . . . . . . . . . . . . Chy07g01214 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007776 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36