Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1170 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGCAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAACAACAACAATTGCTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGTCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTTATAATACCTATAATCATCATCATCATAATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCGCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTAGCAGTGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCGTCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCCGATGCCGATGCCGATGCCGATGTCAATGTCAATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1176 44.22 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQDQEMEECCNNNNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFYNTYNHHHHNHNRHPVLDGSSYGGASAFYHLRSPATAPQIEAVPVVADGKGGGSSGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMPMPMPMPMSMSMSMQMPINNNNVSTMEFFEKGKSSMSSSFDFDT 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24085315 24086490 - CrPI670011_07g011700.1 Cre07g1170 503751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1170 391 ProSiteProfiles B3 DNA-binding domain profile. 72 176 IPR003340 GO:0003677(InterPro)
Cre07g1170 391 MobiDBLite consensus disorder prediction 15 30 - -
Cre07g1170 391 MobiDBLite consensus disorder prediction 15 52 - -
Cre07g1170 391 Gene3D - 47 180 IPR015300 -
Cre07g1170 391 Pfam B3 DNA binding domain 72 175 IPR003340 GO:0003677(InterPro)
Cre07g1170 391 FunFam B3 domain-containing protein 65 184 - -
Cre07g1170 391 SUPERFAMILY DNA-binding pseudobarrel domain 69 174 IPR015300 -
Cre07g1170 391 CDD B3_DNA 70 159 IPR003340 GO:0003677(InterPro)
Cre07g1170 391 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 24 308 IPR044800 GO:0003700(InterPro)
Cre07g1170 391 SMART B3_2 72 176 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1000 Cre-Chr6:3567285 Cre07g1170 Cre-Chr7:24085315 8.30E-52 dispersed
Cre07g1170 Cre-Chr7:24085315 Cre08g0705 Cre-Chr8:20032569 2.60E-09 dispersed
Cre10g1985 Cre-Chr10:34551782 Cre07g1170 Cre-Chr7:24085315 1.50E-38 transposed
Cre07g1170 Cre-Chr7:24085315 Cre09g2381 Cre-Chr9:43162532 3.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54025 PF02362 B3 1.50E-27 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1170 K09287 - csv:101220139 495.738