Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1170 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGCAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAACAACAACAATTGCTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGTCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTTATAATACCTATAATCATCATCATCATAATCATAATCGTCATCCTGTTCTTGACGGCTCGTCCTACGGTGGGGCATCGGCTTTTTACCATTTGAGATCCCCCGCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTAGCAGTGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCGTCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCCGATGCCGATGCCGATGCCGATGTCAATGTCAATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1176 44.22 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQDQEMEECCNNNNNNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFYNTYNHHHHNHNRHPVLDGSSYGGASAFYHLRSPATAPQIEAVPVVADGKGGGSSGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMPMPMPMPMSMSMSMQMPINNNNVSTMEFFEKGKSSMSSSFDFDT 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24085315 24086490 - CrPI670011_07g011700.1 Cre07g1170 503751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1170 391 ProSiteProfiles B3 DNA-binding domain profile. 72 176 IPR003340 GO:0003677(InterPro)
Cre07g1170 391 MobiDBLite consensus disorder prediction 15 30 - -
Cre07g1170 391 MobiDBLite consensus disorder prediction 15 52 - -
Cre07g1170 391 Gene3D - 47 180 IPR015300 -
Cre07g1170 391 Pfam B3 DNA binding domain 72 175 IPR003340 GO:0003677(InterPro)
Cre07g1170 391 FunFam B3 domain-containing protein 65 184 - -
Cre07g1170 391 SUPERFAMILY DNA-binding pseudobarrel domain 69 174 IPR015300 -
Cre07g1170 391 CDD B3_DNA 70 159 IPR003340 GO:0003677(InterPro)
Cre07g1170 391 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 24 308 IPR044800 GO:0003700(InterPro)
Cre07g1170 391 SMART B3_2 72 176 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1170 K09287 - - csv:101220139 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1000 Cre-Chr6:3567285 Cre07g1170 Cre-Chr7:24085315 8.30E-52 dispersed
Cre07g1170 Cre-Chr7:24085315 Cre08g0705 Cre-Chr8:20032569 2.60E-09 dispersed
Cre10g1985 Cre-Chr10:34551782 Cre07g1170 Cre-Chr7:24085315 1.50E-38 transposed
Cre07g1170 Cre-Chr7:24085315 Cre09g2381 Cre-Chr9:43162532 3.50E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1985 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 8.1e-48 187.2
Cre06g1000 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 6.0e-43 171.0
Cre09g2381 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.4e-39 159.8
Cre07g1170 . 64 175 RAV Transcription Factor Family AT2G36080 69.2 1.8e-39 159.5
Cre05g2474 . 183 306 RAV Transcription Factor Family AT2G36080 60.8 5.8e-38 154.5
Cre09g2381 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.2e-56 216.5
Cre06g1000 . 74 325 RAV Transcription Factor Family AT2G46870 50.6 1.4e-53 207.2
Cre07g1170 . 67 313 RAV Transcription Factor Family AT2G46870 51.9 6.7e-53 204.9
Cre05g2474 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.2e-39 159.5
Cre10g1985 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.7e-38 155.6
Cre10g1985 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.5e-44 174.9
Cre06g1000 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 8.3e-40 161.0
Cre09g2381 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 7.0e-39 157.9
Cre07g1170 . 67 175 RAV Transcription Factor Family AT3G11580 63.9 2.0e-38 156.4
Cre09g2381 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.5e-52 203.0
Cre07g1170 . 66 203 RAV Transcription Factor Family AT3G61970 68.8 4.3e-49 192.2
Cre06g1000 . 82 202 RAV Transcription Factor Family AT3G61970 76.6 9.7e-49 191.0
Cre05g2474 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.8e-39 160.2
Cre06g1000 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.6e-42 169.9
Cre09g2381 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 7.5e-42 168.3
Cre07g1170 . 68 175 RAV Transcription Factor Family AT4G01500 66.4 6.5e-38 155.2
Cre10g1985 . 41 239 RAV Transcription Factor Family AT5G06250 53.7 1.7e-49 193.4
Cre06g1000 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.9e-40 163.3
Cre09g2381 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 2.1e-39 159.8
Cre05g2474 . 180 291 RAV Transcription Factor Family AT5G06250 61.7 2.6e-37 152.9
Cre06g2098 . 45 339 RAV Transcription Factor Family AT1G50680 52.5 2.1e-84 309.7
Cre03g1653 . 47 330 RAV Transcription Factor Family AT1G50680 54.0 7.7e-79 291.2
Cre06g2098 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 8.3e-84 307.8
Cre03g1653 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 2.0e-77 286.6
Cre05g2474 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 9.0e-107 384.0
Cre03g1277 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.3e-92 337.0
Cre09g2381 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.8e-38 154.8
Cre06g1000 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.5e-37 154.1
Cre10g1985 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.5e-37 154.1
Cre05g2474 . 6 345 RAV Transcription Factor Family AT3G25730 61.1 5.4e-101 364.8
Cre03g1277 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 1.1e-88 323.9
Cre10g1985 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.6e-36 150.6
Cre05g2474 . 1 348 RAV Transcription Factor Family AT1G68840 62.2 3.2e-112 402.1
Cre03g1277 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.4e-93 338.6
Cre10g1985 . 41 169 RAV Transcription Factor Family AT1G68840 64.6 6.3e-39 158.7
Cre09g2381 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.8e-38 157.1
Cre06g1000 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.2e-37 154.5
Cre05g2474 . 6 345 RAV Transcription Factor Family AT3G25730 61.1 5.4e-101 364.8
Cre03g1277 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 1.1e-88 323.9
Cre10g1985 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.6e-36 150.6
Cre06g2098 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 8.3e-84 307.8
Cre03g1653 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 2.0e-77 286.6
Cre10g1985 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.5e-44 174.9
Cre06g1000 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 8.3e-40 161.0
Cre09g2381 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 7.0e-39 157.9
Cre07g1170 . 67 175 RAV Transcription Factor Family AT3G11580 63.9 2.0e-38 156.4
Cre06g1000 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.6e-42 169.9
Cre09g2381 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 7.5e-42 168.3
Cre07g1170 . 68 175 RAV Transcription Factor Family AT4G01500 66.4 6.5e-38 155.2
Cre10g1985 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 8.1e-48 187.2
Cre06g1000 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 6.0e-43 171.0
Cre09g2381 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.4e-39 159.8
Cre07g1170 . 64 175 RAV Transcription Factor Family AT2G36080 69.2 1.8e-39 159.5
Cre05g2474 . 183 306 RAV Transcription Factor Family AT2G36080 60.8 5.8e-38 154.5
Cre10g1985 . 41 239 RAV Transcription Factor Family AT5G06250 53.7 1.7e-49 193.4
Cre06g1000 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.9e-40 163.3
Cre09g2381 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 2.1e-39 159.8
Cre05g2474 . 180 291 RAV Transcription Factor Family AT5G06250 61.7 2.6e-37 152.9
Cre09g2381 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.2e-56 216.5
Cre06g1000 . 74 325 RAV Transcription Factor Family AT2G46870 50.6 1.4e-53 207.2
Cre07g1170 . 67 313 RAV Transcription Factor Family AT2G46870 51.9 6.7e-53 204.9
Cre05g2474 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.2e-39 159.5
Cre10g1985 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.7e-38 155.6
Cre06g2098 . 45 339 RAV Transcription Factor Family AT1G50680 52.5 2.1e-84 309.7
Cre03g1653 . 47 330 RAV Transcription Factor Family AT1G50680 54.0 7.7e-79 291.2
Cre09g2381 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.5e-52 203.0
Cre07g1170 . 66 203 RAV Transcription Factor Family AT3G61970 68.8 4.3e-49 192.2
Cre06g1000 . 82 202 RAV Transcription Factor Family AT3G61970 76.6 9.7e-49 191.0
Cre05g2474 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.8e-39 160.2
Cre05g2474 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 9.0e-107 384.0
Cre03g1277 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.3e-92 337.0
Cre09g2381 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.8e-38 154.8
Cre06g1000 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.5e-37 154.1
Cre10g1985 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.5e-37 154.1
Cre05g2474 . 1 348 RAV Transcription Factor Family AT1G68840 62.2 3.2e-112 402.1
Cre03g1277 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.4e-93 338.6
Cre10g1985 . 41 169 RAV Transcription Factor Family AT1G68840 64.6 6.3e-39 158.7
Cre09g2381 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.8e-38 157.1
Cre06g1000 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.2e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54025 PF02362 B3 1.50E-27 CL0405 Cre TF