Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1220 ATGGATATTGAGAAAATTTTCCACATGAATGGTGGAATTGGCAACAATAGCTATGCCAAAAACTCCCATCTTCAGAAGAAAGCATCAGATATGGTAAAGCACATAACAATGGAGGCCATAGAGCAAGTTTACCTTTCCACCGGTGCTCCGGCCAGCTTCGGAATTGCGGATCTGGGTTGCTCCTCTGGCCCAAATTCCTTATCGATCATCAAAGAAATAATCCAAGCCGTCCAAGCGCTTAGCTCCAGCCATCTCCAGCCGTCACCGGAGTTCCGAGTCTATTTGAACGACCTTCCGACCAATGATTTCAACTCTATCTTCAAAGCCCTCCCTGATTTCTGCAGAGAGCTTGAAAACGAAGGACAAAATGAAAATCCATCAGGGTTTTTCATTGGAGCCTATCCAGGCTCCTTTTACCAGAGACTTTTCCCCAATAATTGCTTGCACTTCGTCTATTCCTCTTACAGTCTCCACTGGCTCTCTAGGGTTCCTGAGGGGATCCGAGATGAATTAGGGAAACCGGTGAACAGAGGGACGATTTATATATCGGAGAGGAGTCCGATTTCGATAGCGGAGGCTTATGTGAAACAATTCCGTCAAGATTTTTGGGAGTTTCTGAGGAAGAGGGCGAAGGAGGTGGTTTCCGGCGGGCGGATGGTGCTGATTTTGCTCGGAAGAGACGGAGCCGATCATGTGGATAGGGGAAATTCCTTCTTGTGGCACCTTCTTGCAGGAGCCTTCGCCATTTTGGTCTCTCAGGGAGAAATAAAGGAGGAAGAGGTGGATAGCTATGATGTGAATTTCTATGCACCAAACAAAGAGGAAATAGAAGAGGAAGTGAAAAGAGAAGGGTCATTTGGGTTGGAGAGAATAGAGAAGTTTGAGTTAGAGAAGAAGGTGAAAAATGGAGAGAGCTATGGGAAAGAAGTTGCCAAGTCTGTTAGAGCCATTCAAGAGTCTATGATTTCTCACCATTTTGGTGATGCAATTTTGGACTCTTTATTTCAGAATTATGGAACCATTTTGGATGAAGAAATGGCTAAACAAGAAATCAAACCCATCTCTTTTGTTATTGTTCTTACTAAGTTCTGA 1092 44.41 MDIEKIFHMNGGIGNNSYAKNSHLQKKASDMVKHITMEAIEQVYLSTGAPASFGIADLGCSSGPNSLSIIKEIIQAVQALSSSHLQPSPEFRVYLNDLPTNDFNSIFKALPDFCRELENEGQNENPSGFFIGAYPGSFYQRLFPNNCLHFVYSSYSLHWLSRVPEGIRDELGKPVNRGTIYISERSPISIAEAYVKQFRQDFWEFLRKRAKEVVSGGRMVLILLGRDGADHVDRGNSFLWHLLAGAFAILVSQGEIKEEEVDSYDVNFYAPNKEEIEEEVKREGSFGLERIEKFELEKKVKNGESYGKEVAKSVRAIQESMISHHFGDAILDSLFQNYGTILDEEMAKQEIKPISFVIVLTKF 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25584952 25587270 + CrPI670011_07g012200.1 Cre07g1220 503801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1220 363 Pfam SAM dependent carboxyl methyltransferase 38 362 IPR005299 GO:0008168(InterPro)
Cre07g1220 363 Gene3D - 6 349 IPR042086 -
Cre07g1220 363 Gene3D Vaccinia Virus protein VP39 21 297 IPR029063 -
Cre07g1220 363 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 359 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Cre07g1220 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 362 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1220 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0924 Cre-Chr7:8844423 Cre07g1220 Cre-Chr7:25584952 3.60E-45 dispersed
Cre07g0925 Cre-Chr7:8852478 Cre07g1220 Cre-Chr7:25584952 2.50E-46 dispersed
Cre07g1220 Cre-Chr7:25584952 Cre10g0320 Cre-Chr10:2064284 8.10E-66 dispersed
Cre04g1585 Cre-Chr4:34377062 Cre07g1220 Cre-Chr7:25584952 8.40E-12 wgd
Cre05g2050 Cre-Chr5:32501490 Cre07g1220 Cre-Chr7:25584952 3.50E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1008 . . . . Bpe15g00419 . . . . Cmo16g00683 Cma03g00732 . . . . . . . . . . . . . . . . . . . . Cone8ag0823 . . . . . Chy07g01249 . . . . . . . . . . . . Cma16g00627 . . . . Cpe14g00535 . . . . . . . Cla07g00819 Cam07g0883 Cec07g0936 Cco07g0924 Clacu07g0858 Cmu07g0861 Cre07g1220 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006385 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 3 2 1 37