Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1228 ATGTTTTCAATGAAAGAGATGCCATCTCCACAGTCATTATTCTCAGCTTACGCCTCCATGGCCGGCTCCATAATGTTGTTCCGATCAATGGCCAACGACCTTATCCCAGCCCCTGTTCGGTCGTACGTGGCGGCCGGAATCCGTCGCCTGTTCAACTCGCAGTCCTCTCTGCTCACTCTAATCATCGAAGAGACGAACGGCATATCCCCAAATCAAATATTTGAGGCCGCCGAGATTTACCTGTCCACGAAAATCACCTCCGACACTAGTCGCCTCCGCATCTCAAAAACCCCAAAGGACAAAAACCCAACTCTCCGCCTTGAAAAGGGCGAGGAATTAACCGATTCCTTTGACGGAATCCCATTGTTATGGACCTTCAATTCCCAAGACCACGACAAAAACTCCAACAACCCCAACAATGGCCCCACTTTGTTTCCACCAAAAGCAGAGCGCCGCTACTTCGAGCTGAAATTTGACAAAACCCAGCGGTACAAAATCCTGAATTCCTACATCCCTTTTCTGCTGGATTGTGCTCTGGCCATGAAAAACCAAGAGAGAAGTCTGAAAATGTACACAATGAATAGCTCCGGGTGCTACAGCGGGAAGTGGGAGTCAGTGAATTTGGAGCACCCAGCGACGTTCGAGACGGTGGCGATGGAGGCAGAGGGGAAGAAGGCAGTGATGGAAGATTTGGACAGGTTTTTGAAGAGGAAGGAATTTTATAAGAGAGTTGGGAGGGCGTGGAAAAGAGGGTATTTGTTGTACGGGCCACCGGGAACAGGAAAATCGAGCTTGGTGGCGGCGATGGCAAATTACTTGAAGTTTGATATATATGATCTACAATTGGGGAATGTGGTGCAGGATTCTGATTTGAGGAAGTTGCTTTTGACCACGGGGAATCGCTCCATTTTGGTCATTGAAGATATTGATTGTACTGTTGAGCTGCCGGATCGCCACCATGCTGATTGGCCTAACCATCCTCATGAAATTCAGCTCACATTGTCAGGGCTTTTGAACTTCATCGACGGGCTATGGTCAAGCTGTGGTGACGAGAGGATCATAATCTTTACGACGAACAATAAGGATCGCCTTGACCCAGCACTGCTGCGGCCAGGACGGATGGACATGCACATTCACATGTCATACTGCACCTTCCATGGCTTTAAGCTTCTCGCAGCAAACTACTTGCAAATTGGTCACACAGGACACCGCCTCTTCCCGGAGATCGAAAGCCTTCTCGATGCCACGGAGGTCACGCCGGCCCAAATAGCAGAGGAGCTGATGAAGAGTGAGGATGCTGATGTGTCCCTTGAAGGGTTGGTGAAGGTGCTGAAGAGGAAGAAGCTGGAGCAGGAGGAGGAGGAAAATAATGGTAATGGCGAAGATGGTGAAGAAGAAGGAAAGTTAAGAGAGGCTAAGAAACTGAAAGTAGAGGCGAGGAAGAAGGTGGCAACTAGGGTTACGAGAAGGAAGTTTCTTAGAGGGAGAAATTTTTAG 1497 48.9 MFSMKEMPSPQSLFSAYASMAGSIMLFRSMANDLIPAPVRSYVAAGIRRLFNSQSSLLTLIIEETNGISPNQIFEAAEIYLSTKITSDTSRLRISKTPKDKNPTLRLEKGEELTDSFDGIPLLWTFNSQDHDKNSNNPNNGPTLFPPKAERRYFELKFDKTQRYKILNSYIPFLLDCALAMKNQERSLKMYTMNSSGCYSGKWESVNLEHPATFETVAMEAEGKKAVMEDLDRFLKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDIYDLQLGNVVQDSDLRKLLLTTGNRSILVIEDIDCTVELPDRHHADWPNHPHEIQLTLSGLLNFIDGLWSSCGDERIIIFTTNNKDRLDPALLRPGRMDMHIHMSYCTFHGFKLLAANYLQIGHTGHRLFPEIESLLDATEVTPAQIAEELMKSEDADVSLEGLVKVLKRKKLEQEEEENNGNGEDGEEEGKLREAKKLKVEARKKVATRVTRRKFLRGRNF 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25708667 25711607 + CrPI670011_07g012280.1 Cre07g1228 503809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1228 498 Gene3D - 379 452 - -
Cre07g1228 498 CDD RecA-like_BCS1 227 380 - -
Cre07g1228 498 Gene3D - 202 378 IPR027417 -
Cre07g1228 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 433 IPR027417 -
Cre07g1228 498 Pfam ATPase family associated with various cellular activities (AAA) 252 381 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre07g1228 498 PANTHER BCS1 AAA-TYPE ATPASE 20 452 IPR050747 -
Cre07g1228 498 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre07g1228 498 Coils Coil 437 457 - -
Cre07g1228 498 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Cre07g1228 498 MobiDBLite consensus disorder prediction 449 472 - -
Cre07g1228 498 SMART AAA_5 248 384 IPR003593 GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1228 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1597 Cre-Chr4:34466111 Cre07g1228 Cre-Chr7:25708667 5.70E-100 dispersed
Cre04g1599 Cre-Chr4:34474004 Cre07g1228 Cre-Chr7:25708667 5.80E-121 dispersed
Cre07g1228 Cre-Chr7:25708667 Cre10g1614 Cre-Chr10:30234006 2.80E-85 dispersed
Cre11g1811 Cre-Chr11:29707328 Cre07g1228 Cre-Chr7:25708667 9.80E-115 transposed
Cre04g1593 Cre-Chr4:34448599 Cre07g1228 Cre-Chr7:25708667 2.90E-128 wgd
Cre05g2048 Cre-Chr5:32467808 Cre07g1228 Cre-Chr7:25708667 9.10E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013760 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 24