Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1229 ATGACTTCTCTGTCCTTGTCTCCATTTGATTCTTCATTAAATTTTAAGACTTTCCCCTTCTCAATCCCAAAGAGTTGCGGCGACAAGAACATGGCTACGTTCGTGGAGCCACCCAACGGATTCAGATCAATGGGGAAGCATTATTACACAATGTGGCAAACTCTCTTTGAAATTGATACTAAATATATTCCAATCAAGCCAATTGGGCGAGGAGCTTATGGTGTGGTGTGTTCTTCGATTAACCGAGAGACCAACGAGAAAGTGGCGATCAAGAAGATTCATAATGTGTTTGAGAATCGCACGGACGCAATGAGAACACTGAGGGAGCTGATGCTTCTGAGGCATATAAGGCATGAGAATGTGATTGCTTTGAAGGATGTGATGATGCCAATCCATAGAAAAAGCTTTAAGGATGTTTATTTGGTTTATGAACTTATGGATACGGATCTTCATCAGATTATCAAGTCCCCTCAGCCACTTTCCAATGATCATTGCAAGTACTTTATCTATCAGTTGCTCTGCGGGTTGCAGTATCTTCATTCGGCAAACATTCTTCACCGGGACTTGAAGCCGGGGAACCTCCTTGTCAATGCTAACTGCGATCTAAAGATATGCGATTTCGGGTTGGCACGAACTAGCATGGGCCGTGACCAGTTCATGACTGAGTATGTTGTTACTCGCTGGTATCGCGCTCCAGAGCTTCTCCTCTGCTGTGACAACTATGGAACTTCCATTGATGTATGGTCTGTGGGATGCATCTTTGCTGAGATTCTAGGTCGCCAACCTATTTTCCCTGGGACGGAGTGCCTCAACCAACTTAACTTAATCATCAATATTCTTGGTAGTCCAAAGGAAGCAGATATCGAGTTCATTGCCAATGGAAAGGCCAGAAATTATATCAAGGCAATGCCCTTCTCGAGAGGAATACGCCTTTCGCATCTATATCCACACGCTGAACCTTTAGCTTTAGATTTGTTACAGAAGATGCTTGTGTTTGATCCAACTAAGAGAATTACTGTTGACGAAGCACTTCAACATCCATACATGTCAGGGCTATACGACCCGAGATTCAACCCTCCTGTTGAGGTTCCCCTCACTCTTGACATTGACGACTCACTTACGGAGCCTAAGATCAGGGAAATGATGTTGAACGAGATGCTGTATTACCATCCGGAAGCTGTTTCAGGATATTATTGA 1197 43.78 MTSLSLSPFDSSLNFKTFPFSIPKSCGDKNMATFVEPPNGFRSMGKHYYTMWQTLFEIDTKYIPIKPIGRGAYGVVCSSINRETNEKVAIKKIHNVFENRTDAMRTLRELMLLRHIRHENVIALKDVMMPIHRKSFKDVYLVYELMDTDLHQIIKSPQPLSNDHCKYFIYQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSMGRDQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECLNQLNLIINILGSPKEADIEFIANGKARNYIKAMPFSRGIRLSHLYPHAEPLALDLLQKMLVFDPTKRITVDEALQHPYMSGLYDPRFNPPVEVPLTLDIDDSLTEPKIREMMLNEMLYYHPEAVSGYY 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25739193 25741922 + CrPI670011_07g012290.1 Cre07g1229 503810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1229 398 Gene3D Transferase(Phosphotransferase) domain 1 146 370 - -
Cre07g1229 398 ProSitePatterns Protein kinases ATP-binding region signature. 68 92 IPR017441 GO:0005524(InterPro)
Cre07g1229 398 Gene3D Phosphorylase Kinase; domain 1 49 145 - -
Cre07g1229 398 Pfam Protein kinase domain 65 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1229 398 SUPERFAMILY Protein kinase-like (PK-like) 54 356 IPR011009 -
Cre07g1229 398 FunFam Mitogen-activated protein kinase 48 155 - -
Cre07g1229 398 FunFam Mitogen-activated protein kinase 146 375 - -
Cre07g1229 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1229 398 ProSiteProfiles Protein kinase domain profile. 62 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1229 398 SMART serkin_6 62 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1229 398 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 56 387 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cre07g1229 398 ProSitePatterns MAP kinase signature. 97 200 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1229 Cre-Chr7:25739193 Cre08g1426 Cre-Chr8:27224856 8.00E-168 dispersed
Cre07g1229 Cre-Chr7:25739193 Cre09g2280 Cre-Chr9:42001456 1.70E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64268 PF00069 Pkinase 4.20E-70 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1229 K20537 - csv:101203896 706.057