Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1239 ATGACCAGTTCCTCCGACTCCGCTCGTAAGGCTCTCAGTAAGATTGCGTGCAATCGCCTCCAGAAGGAACTCGTTGAGTGGCAGGTCAATCCTCCTGCTGGTTTTAAACACAAGGTCACCGATAATCTTCAGAGGTGGGTGATTGAAGTCAACGGAGCCCCTGGAACTCTCTATGCTAATGAAACCTACCAGCTTCAGGTGGACTTCCCTGAGCATTACCCAATGGAAGCCCCGCAGGTTATATTTCTGCATCCAGCTCCTCTGCATCCTCATATCTATAGCAATGGTCACATTTGTCTAGATATTTTGTATGATTCGTGGTCACCTGCGATGACCGTAAGTTCTATCTGTATCAGCATTCTCTCCATGCTGTCGAGCTCCACAGCAAAGCAACGCCCTGACGATAACGATCGTTATATCTTCCATTGTTATATGCCTGTGGCTTCCCTTGTCTGTAAGGTGAAAGAAGTAGAAAATGATTATGGAAAAGGACCAAGTAAAGTGGTAAGGCCTGGCATTTGTAAAGGAAGATGA 534 46.44 MTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTAKQRPDDNDRYIFHCYMPVASLVCKVKEVENDYGKGPSKVVRPGICKGR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25893619 25896755 - CrPI670011_07g012390.1 Cre07g1239 503820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1239 177 Gene3D Ubiquitin Conjugating Enzyme 15 148 IPR016135 -
Cre07g1239 177 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 14 139 IPR050113 -
Cre07g1239 177 Pfam Ubiquitin-conjugating enzyme 19 137 IPR000608 -
Cre07g1239 177 FunFam probable ubiquitin-conjugating enzyme E2 16 13 150 - -
Cre07g1239 177 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 163 IPR000608 -
Cre07g1239 177 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Cre07g1239 177 SMART ubc_7 18 156 - -
Cre07g1239 177 CDD UBCc 17 117 IPR000608 -
Cre07g1239 177 SUPERFAMILY UBC-like 8 126 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1239 K10688 - - csv:101202936 280.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1239 Cre-Chr7:25893619 Cre09g2306 Cre-Chr9:42322828 1.50E-17 dispersed
Cre07g1239 Cre-Chr7:25893619 Cre05g0186 Cre-Chr5:1882957 8.90E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1050 . Blo16g00061 . Bda10g00150 . Bpe13g00430 . Bma15g00984 . Cmo16g00693 . . . . . . . . . . . . . . . . . . . . . Cone8ag0829 Cone12ag0782 . . . . Chy07g01261 . . Blo06g00146 Bda11g01849 . Bpe10g00132 . . Bma06g00109 . . . Cma16g00635 . . . . . . . . . . . . Cla07g00833 Cam07g0903 Cec07g0955 Cco07g0945 Clacu07g0876 Cmu07g0877 Cre07g1239 Lsi07g00235 Csa04g00542 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003259 4 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 4 1 1 1 1 4 1 2 49