Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g1245 | ATGGCCGGTTTTTTCCCACTAGGCGGCGCCGGAAGCAGCGGAAGAGGTTCCAATTATCATCTTCCTACTACTACTACTAGTATCACCACCAGCGGCGGCGAAATAATTCATCCCAACGAGGGGTTATTTTGGTACAAGAATTATGAGAGATTGGAAACGTGGGAAGAACAACAGCAACCGCAGGAACAAGGGGGAGAAGGATTTGTTTACTCGGGCGATGAATCGCCGGCTAGATCGTCGTTGGTGATGGTGAGATCGGGAAGAGGCGGCGGTGGAGGGCATGTAACGAGCTGCCAAGACTGTGGAAATCAAGCGAAAAAAGATTGCGTTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACTCACGTTAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGTGACCGCCACCTCCGTTGCCTCGCCTCTAACCCCAAACGCCCTAAAGACAACCCCGCTGCTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTAAACTCTACGGCGGTGTTTCGGTGCGTACGAATGACAACGTTGGACGAAACCAACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCATATCTTCAAAGGCATTCTTTACGACCACGGCCCTGAACAACAACTACAACAACAGCCACCCACCTCCGCCTCCCCTGACGCCTCCGCCCTCCTCATCACCACCGCTGAATCCGCCGCATTGCTCGATCCACCTCCGCCGTACCCCACTCCTCTTTCCACCTACATCGCCACCGGTACGCAATTTTTTCTTCCCCCAACATCTTAA | 819 | 52.38 | MAGFFPLGGAGSSGRGSNYHLPTTTTSITTSGGEIIHPNEGLFWYKNYERLETWEEQQQPQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGHVTSCQDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRCLASNPKRPKDNPAASSGLEMGNFPVEVNSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPEQQLQQQPPTSASPDASALLITTAESAALLDPPPPYPTPLSTYIATGTQFFLPPTS | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 26036887 | 26037814 | - | CrPI670011_07g012450.1 | Cre07g1245 | 503826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g1245 | 272 | MobiDBLite | consensus disorder prediction | 147 | 167 | - | - | |
Cre07g1245 | 272 | Pfam | Domain of unknown function (DUF702) | 96 | 217 | - | - | |
Cre07g1245 | 272 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 266 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Cre07g1245 | 272 | NCBIfam | putative zinc finger domain, LRP1 type | 97 | 139 | IPR006510 | - | |
Cre07g1245 | 272 | NCBIfam | LRP1 C-terminal domain | 169 | 216 | IPR006511 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g1245 | Cre-Chr7:26036887 | Cre09g1468 | Cre-Chr9:28707527 | 3.00E-41 | dispersed | |
Cre04g1614 | Cre-Chr4:34589757 | Cre07g1245 | Cre-Chr7:26036887 | 9.20E-53 | wgd | |
Cre05g2032 | Cre-Chr5:32310202 | Cre07g1245 | Cre-Chr7:26036887 | 4.20E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54032 | PF05142 | DUF702 | 1.20E-50 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g1245 | K27807 | - | csv:101216097 | 380.948 |