Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1264 ATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCAGAGGCGGCGGCAGGGGGGAAAAAGAGGAAACTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCTCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGTCGTCTAGAAACTGAGATATTGAAGCTGAAAGAACAACTATCAGAAGTAGAGAAAGAGAAAGAGAGGGTAATAATGGGAGAAGGGGGCGATGGGGGTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCATTGTCAATGGATGCGATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAACTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGA 651 46.24 MNHQEAEEHQAVQISQLYTELYIQMVPQQGNLGESKPRRRRKKNRGSEAEAAAGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLSEVEKEKERVIMGEGGDGGLSSSSPSPSMSLSMDAMDPTCLGEIPPSYEDVFYYMPENYCIYGMEWPNPYI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26560183 26562965 + CrPI670011_07g012640.1 Cre07g1264 503845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1264 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677(InterPro)
Cre07g1264 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677(InterPro)
Cre07g1264 216 MobiDBLite consensus disorder prediction 29 59 - -
Cre07g1264 216 CDD homeodomain 56 112 IPR001356 GO:0003677(InterPro)
Cre07g1264 216 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Cre07g1264 216 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Cre07g1264 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre07g1264 216 Coils Coil 134 154 - -
Cre07g1264 216 SMART HOX_1 54 115 IPR001356 GO:0003677(InterPro)
Cre07g1264 216 Coils Coil 103 130 - -
Cre07g1264 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677(InterPro)
Cre07g1264 216 Pfam Homeodomain 57 110 IPR001356 GO:0003677(InterPro)
Cre07g1264 216 Gene3D - 47 119 - -
Cre07g1264 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 159 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1550 Cre-Chr4:34116401 Cre07g1264 Cre-Chr7:26560183 5.40E-41 dispersed
Cre07g1264 Cre-Chr7:26560183 Cre10g2062 Cre-Chr10:35320509 3.40E-19 dispersed
Cre07g1264 Cre-Chr7:26560183 Cre01g1323 Cre-Chr1:26449073 1.80E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54035 PF00046 Homeodomain 4.70E-17 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1264 K09338 - csv:101221080 328.176