Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1271 ATGCCAACGGACTTAGAAAATTCCTCCAACGCTTCTGGCGAAGTCAGTATCTCCTCCACTGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCATAATCTTCCATGGAAACTCCGGCAACGGACTAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAAAAATATGCAGTCAAGTCCGATTGGAAGGCTCATTCTAAGATTTGTGGCACCAGAGAGTACAAATGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCCTTCTGTGATGCGTTGACGAAGGAGGCTGCTGGAAGTTTGTCTCCGGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCTCATGTTCAGCCATCGGGTAGTTCGTCTCCGCCGCCTTCTGCCCCTCCTCTTTCCGCCGCGACCGGTGCCGCGCCAATAGCTCCTCCTGCATCCACTGACGCGATATCATCAATCGCGTCCATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCAGCTAGGAGAGGCACCGGGCAGAACTACCCTAACTGGAAACTCCGGCAGCAGCAGCAACGCTAGCGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCACCTGCATTTTGCGACTTATTACGAGCCATGGCGCGGCCTGATCGGGCGGCTGAAATTGCACCGCCGTTGCTTTTTGAACCTCTTTCGCTGTGCCTATCGACCGACACCGAATCGACACTTTTTCGAGCTGGAATCCAAGAGTGCCGCCCATATGTGCCACCGACACCGCCGTCCATGTCCGCCACCGGACTCCTACAGAAGGCCGCTCAAATGGGCGCTGCAGCGGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA 1209 53.68 MPTDLENSSNASGEVSISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDALTKEAAGSLSPAAAENPNLESDPHVQPSGSSSPPPSAPPLSAATGAAPIAPPASTDAISSIASIENKASPENPPPQLGEAPGRTTLTGNSGSSSNASVLASLFASSAASLSLQPPQPPAFCDLLRAMARPDRAAEIAPPLLFEPLSLCLSTDTESTLFRAGIQECRPYVPPTPPSMSATGLLQKAAQMGAAAAGASVFRGLGLSSSSSSAQQGSL 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26724539 26727754 - CrPI670011_07g012710.1 Cre07g1271 503852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1271 402 MobiDBLite consensus disorder prediction 1 26 - -
Cre07g1271 402 Gene3D Classic Zinc Finger 41 108 - -
Cre07g1271 402 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 197 - -
Cre07g1271 402 FunFam protein indeterminate-domain 12-like 40 108 - -
Cre07g1271 402 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Cre07g1271 402 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Cre07g1271 402 MobiDBLite consensus disorder prediction 253 279 - -
Cre07g1271 402 MobiDBLite consensus disorder prediction 1 44 - -
Cre07g1271 402 MobiDBLite consensus disorder prediction 196 239 - -
Cre07g1271 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cre07g1271 402 Gene3D Classic Zinc Finger 130 193 - -
Cre07g1271 402 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Cre07g1271 402 SMART c2h2final6 61 83 IPR013087 -
Cre07g1271 402 SMART c2h2final6 137 157 IPR013087 -
Cre07g1271 402 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cre07g1271 402 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 391 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre07g1271 402 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cre07g1271 402 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1271 Cre-Chr7:26724539 Cre08g1467 Cre-Chr8:27543014 1.00E-90 dispersed
Cre04g1553 Cre-Chr4:34142591 Cre07g1271 Cre-Chr7:26724539 5.50E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54038 PF00096 zf-C2H2 0.0039 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1271 K25869 - csv:101215476 594.349