Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1273 ATGTCCTTCTCCATCTCCACCCGCCACATCCGTCGCCTATCTACGGCAGCCACCGCCGCCGCCAACGCAACGGCAACGACAACGACAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAATTAAGAACCGAGTATGATCCAGATAAAGCCCTCGACATTTACTCTTCTGTTTCCAGTCACTACACCTCCCCTGTCTCTTCTCGTTACGCTCAGGAGCTAACCATCCGGCGCCTTGCAAAGTCTCGTCGGTTCGACGACATCCAATCCCTAATCGAGTCCCATAAAAACGACCCGAAGATCACTCAGGAGCCATTTTTGTCCACCCTGATTCGATCCTATGGTCGAGCTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAGATGGGGGATTTAGGTACTCCTCGATCCGCGATTTCCTTTAATGCCCTGTTATCTGCTTGTAACCTTTCGAAGCAATTCGACAAGGTTCCTCAACTGTTCGACGAAATTCCCAAAAAATATAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTTAAATCCTATTGCGACGCCGGTTCCCCTGAGAAGGCCATGCAGATTGTTAGACAGATGGAGGAAAATGGCGTGGAGGTAACTGCTGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGAGAAAATCTGGGAGCAGATGATATCAAAAGGGTGTGAACTTGATGTGGGAGCCTATAATGTTAGACTGATGCACAAGCATGGTGGCAAGCCTGAGCATGTGCAAGCTTTAATCGAGGAAATGGCGAATTCAGGTTTGAAACCAGACACAATTAGTTATAATTACTTGATGACTTGTTATTGTAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGGCAAATGGGTGTAAAATGAATGCTGCAACTTTTAGGACATTTATATATTATCTCTGTAGAAATGGGGAGTATGAGAAAGGGTATAAGGTTTTCAAGGAGAGTGTGAAGATGCATAAGATTCCTGATTTTAACACACTGAAGTATTTGGTGGAGGGGCTGGTGGAGAAGAAGAAGATGAAAGAAGCTAAGGGTTTAATAAGGACTATAAGGAAGAAGTTCCCTCCTGACTCTTTGAAGGCTTGGAGAAAAGTTGAGGAGAGTCTTGGTTTGGCTTCTGCTGCTGATGATGCTTCTTCTAAGGATGATGAAACTAAAACATGA 1245 44.5 MSFSISTRHIRRLSTAATAAANATATTTTTTSSSISISKAKSKLRTEYDPDKALDIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIQSLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMGDLGTPRSAISFNALLSACNLSKQFDKVPQLFDEIPKKYNFSPNKISYGILVKSYCDAGSPEKAMQIVRQMEENGVEVTAVTFTTILDALYKKGESEEAEKIWEQMISKGCELDVGAYNVRLMHKHGGKPEHVQALIEEMANSGLKPDTISYNYLMTCYCKNGMIDEAKKVYDDMEANGCKMNAATFRTFIYYLCRNGEYEKGYKVFKESVKMHKIPDFNTLKYLVEGLVEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEESLGLASAADDASSKDDETKT 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26779310 26780554 + CrPI670011_07g012730.1 Cre07g1273 503854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1273 414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Cre07g1273 414 Pfam PPR repeat 110 136 IPR002885 -
Cre07g1273 414 Pfam PPR repeat 142 170 IPR002885 -
Cre07g1273 414 Gene3D Tetratricopeptide repeat domain 256 414 IPR011990 GO:0005515(InterPro)
Cre07g1273 414 PANTHER OS01G0228400 PROTEIN 24 238 - -
Cre07g1273 414 NCBIfam pentatricopeptide repeat 213 247 IPR002885 -
Cre07g1273 414 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Cre07g1273 414 NCBIfam pentatricopeptide repeat 282 316 IPR002885 -
Cre07g1273 414 NCBIfam pentatricopeptide repeat 142 176 IPR002885 -
Cre07g1273 414 NCBIfam pentatricopeptide repeat 318 346 IPR002885 -
Cre07g1273 414 NCBIfam pentatricopeptide repeat 110 136 IPR002885 -
Cre07g1273 414 Gene3D Tetratricopeptide repeat domain 6 156 IPR011990 GO:0005515(InterPro)
Cre07g1273 414 Gene3D Tetratricopeptide repeat domain 157 255 IPR011990 GO:0005515(InterPro)
Cre07g1273 414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Cre07g1273 414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Cre07g1273 414 Pfam PPR repeat family 279 323 IPR002885 -
Cre07g1273 414 Pfam PPR repeat family 175 224 IPR002885 -
Cre07g1273 414 SUPERFAMILY TPR-like 280 384 IPR011990 GO:0005515(InterPro)
Cre07g1273 414 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1273 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1854 Cre-Chr4:36225108 Cre07g1273 Cre-Chr7:26779310 7.00E-18 dispersed
Cre05g0098 Cre-Chr5:1214294 Cre07g1273 Cre-Chr7:26779310 3.30E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28