Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1280 ATGAGTTCAACGTATGATGAGAGTGCTCCGGGGCCGGACTCTCCATCCCAGCCCGCCGCTCCACCGCCAGATCCATCGTCTTCGTCGTCACCCCCACCGTCATTGTCACCACCTTCTCCCGATCGCAACTCCGATTTCTCTCCTCCACCATCACCAGAAAACGATGATGGCTCATCCGATATGTCCTCACCACGCCCATCAGATTCTCCATCTCCAAAGTCGCCGTCGAATGGTTCTTCCGATGATAACAAATCCCCTCCAGCTCCAAAAGAGGGTAACCAGCGATCACCGCCGCACGTTTCTCATTCTCCTCCATCCCGATCTTCGTCACCGGCAGATGCATTGCCTCCACCAGAAGGAAAGGCATCACCGAAATCGTCCGGAGCAAGACAGCAAGCAACACCGTCGTCCGAGGGGGATTCGTCACCGTCGGAGATCAACCCAGGGGTTATAATTGGGGTGGCGGTGGGGGTGGGCGTTTTCATAATTGTTCTCATATCAATAATTGCAGTGTGTTCAAAGAAGAAGAAGAGAAAGGGAGATCCTATGCAATATTATGGAGATCATGGTCATGGACCTAAAGGTGGTGACTATTACAACAGTTCACAGCAACAAAACTGGCACAACGGCATGCACGGTCCAGGGACGGATCAATTTGGGAGGCCACCGGTATCGGGGTCTCCAGCCGGGAACGGGTGGCCAATGAGTGGCGACAACATGACGACGGGCAGCACCTACACGGGGCCTCCTCTTCCTCCGCCATCACCATCGATCGCCTTTGGGTTCAACAAGAGCACGTTCACCTACGACGAACTTGCAGCAGCAACAGGTGGGTTCGCACACGGGAACCTGCTCGGGCAGGGCGGGTTCGGGTATGTGCACAAGGGGGTGCTGCCCAATGGGAAGGAGGTGGCCGTTAAGAGCCTGAAGGTGGGCAGCGGGCAGGGTGAGAGGGAGTTCATGGCTGAAGTTGAGATTATTAGCAGAGTCCATCATCGGCATTTGGTTTCCTTGGTTGGCTTTTGCATTGCCGGTGGACAAAGAATGTTGGTCTATGAGTTTGTTCCTAACAACACCTTGGAACATCACCTTCATGGCAAAGGTCTCCCAGTAATGGATTGGCCAACCAGACTTCGTATTGCAATAGGTTCTGCCAAGGGTCTTGCTTATCTCCATGAAGATTGTCATCCAAAGATTATTCATCGAGATATCAAGTCAGCTAATATTCTGATCGATGCCAATTTTGAAGCAATGGTGGCTGATTTTGGATTGGCTAAGCTATCCTCAGATAATCATACACATGTCTCCACTAGAGTTATGGGTACATTCGGGTATTTGGCACCAGAATATGCATCAAGCGGAAAGCTGACAGAAAAATCTGATGTATTCTCGTTCGGTGTAATGTTGTTGGAACTCATCACAGGAAAACGACCCGTAGATCCTACTCAAGCCATGGAGGATAGCTTAGTTGATTGGGCTCGACCACTAATGAGCCGGGCATTGATGGAAGGCATCTACGAGGAGTTGGTGGATGTGCGTTTAGAGAATGAGTTCAACACACAAGAAATGGCTCGCATGGTGGCTTGTGCTGCAGCCTCCATTCGCCACTCGGCTAGAAAACGCCCCAAAATGAGCCAGGTGGTTCGAGCCTTAGAAGGAGATGTTTCCTTGGACGACTTAAACGAAGGCATAAGACCTGGGCAAAGCTCCATCTATAGCGCCGCTAGCTCCGATTACGACTCCAGCGCCTACCATGCCGACATGTCGAAATTCAGGAAGATCGCTTTGTCGGACGACAGTAGTGAACTCGCCTCCAGCAACGACTCCAGAGAGATGAACCATCCCGGCCCGGGGACCCAAAGGCCGCTCTTTTGA 1875 51.84 MSSTYDESAPGPDSPSQPAAPPPDPSSSSSPPPSLSPPSPDRNSDFSPPPSPENDDGSSDMSSPRPSDSPSPKSPSNGSSDDNKSPPAPKEGNQRSPPHVSHSPPSRSSSPADALPPPEGKASPKSSGARQQATPSSEGDSSPSEINPGVIIGVAVGVGVFIIVLISIIAVCSKKKKRKGDPMQYYGDHGHGPKGGDYYNSSQQQNWHNGMHGPGTDQFGRPPVSGSPAGNGWPMSGDNMTTGSTYTGPPLPPPSPSIAFGFNKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKGLPVMDWPTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTQAMEDSLVDWARPLMSRALMEGIYEELVDVRLENEFNTQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGIRPGQSSIYSAASSDYDSSAYHADMSKFRKIALSDDSSELASSNDSREMNHPGPGTQRPLF 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26841955 26848329 + CrPI670011_07g012800.1 Cre07g1280 503861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1280 624 MobiDBLite consensus disorder prediction 14 47 - -
Cre07g1280 624 FunFam Proline-rich receptor-like protein kinase PERK1 355 562 - -
Cre07g1280 624 MobiDBLite consensus disorder prediction 125 144 - -
Cre07g1280 624 CDD STKc_IRAK 285 553 - -
Cre07g1280 624 SUPERFAMILY Protein kinase-like (PK-like) 253 551 IPR011009 -
Cre07g1280 624 MobiDBLite consensus disorder prediction 48 109 - -
Cre07g1280 624 ProSiteProfiles Protein kinase domain profile. 279 557 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1280 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1280 624 FunFam proline-rich receptor-like protein kinase PERK1 257 354 - -
Cre07g1280 624 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524(InterPro)
Cre07g1280 624 MobiDBLite consensus disorder prediction 1 146 - -
Cre07g1280 624 MobiDBLite consensus disorder prediction 232 246 - -
Cre07g1280 624 SMART serkin_6 279 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1280 624 MobiDBLite consensus disorder prediction 599 614 - -
Cre07g1280 624 MobiDBLite consensus disorder prediction 599 624 - -
Cre07g1280 624 MobiDBLite consensus disorder prediction 210 252 - -
Cre07g1280 624 Gene3D Transferase(Phosphotransferase) domain 1 355 562 - -
Cre07g1280 624 Gene3D Phosphorylase Kinase; domain 1 255 354 - -
Cre07g1280 624 Pfam Protein tyrosine and serine/threonine kinase 283 550 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1280 624 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 122 594 IPR047117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1280 Cre-Chr7:26841955 Cre11g0731 Cre-Chr11:4424489 1.30E-156 dispersed
Cre10g0927 Cre-Chr10:11713865 Cre07g1280 Cre-Chr7:26841955 3.50E-64 dispersed
Cre07g1280 Cre-Chr7:26841955 Cre11g0934 Cre-Chr11:6612529 9.30E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64269 PF07714 PK_Tyr_Ser-Thr 1.70E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1280 - - - 0.0