Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1283 ATGGCTGTAGAGGAGAAACCAAGAGCCGATAATTCAGCAGAGTCCCCGACTTCGGTTCTGGAAGATGAGGACTTATGTAATGGGGAAAAGGAGATCAAGTTGGAGGAAGAGATAATTTTGGAAGCAAAAAATGGGGATTCCAGTCTTATATCAAAAGAAATGGCTGAGGAGGAACAGAAATTGCTGGAAGCTCGAGTTAAGGAAGAGGAGGCAAAAAGACTTGAGGATTCAACAGAATCTGCAAAGTTGAATGACAATCAGTTCACCAAATTGGATGAACTTCTCACTCAAACACAGTTATACTCAGAATTTTTGTTGGAGAAAATGGATGACATCACATTTAATGGAGTGGAGGAAGATAAGAAATCTGTTGAGAAAAGTAGTGGGCGTGGTTCAAAGAGGAAAACTGCTGCTCGTTATAATAATAGGAAGGCGAAAAGGGCTGTTGCAGCTATGCTGACTAGATCAAAAGAAGGTGAGCGGGAGGAAGATGTAAACTTGACCGAGGAAGAAAGAATTGAGAAGGAGCAGAGTGAACTTGTACCTCTATTGACTGGTGGCAAGTTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTGATTTCGTTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATTTGAAGGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACACTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACCATGAGTGCTATTATTTATCATGGTGATAAAAAACAAAGGGAAGAGATTCGAAGAAAGTCCATGCCTAGAACAGTTGGACCTAAATTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAAAAAATTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGGCATAGACTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTACATAGCTGTTGAAAATAAACTGCTTCTAACTGGGACACCACTGCAGAATAATTTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTACCAGATATTTTTTCGTCCAATGAGGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGTGTCATGCTGAGGAAAAAGAAGAAACACAAGAGAATAGAAAGGCCCAGGTGGTAGCAAAACTGCATGGAATACTGAGACCATTCTTACTTCGGAGAATGAAATCTGATGTTGAGCTAATGCTCCCTCGGAAGAAAGAAATCATAATGTATGCAAACATGACCGAATATCAGAAGAACTTTCAGGAACATTTAGTTAACAAGACATTGGAAAATCATCTCTCTGAGAAGGGATCAGGACATGGTTTTAAAGGAAAACTTAACAATCTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCTGATCTCTTGGAATCAGTCTTTGATGAATCCTATACGTATCCTCCTGTAGAGCAGCTAGTTGAGCAGTGTGGAAAATTTCGCTTACTGGATAGATTGTTGACACGGCTATTTGAACGCAAGCATAAAGTCCTTATTTTCTCGCAATGGACTAAGATTTTGGATATCATGGACTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTGGCGTGAAACTAGATGAAAGGAAAAGACAGATCCAGGAGTTCAATGATGTTAACAGCAGCCACAGGATATTTATTCTTAGTACCCGGGCTGGTGGTCTGGGTATCAACCTCACTGCAGCAGATACTTGTATACTCTATGATAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACACGTTTACAGACTTGCAACAGCTCAGTCTATAGAGGGCCGCATTCTGAAGAGGGCCTTTAGTAAGTTGAAGCTAGAGCATGTGGTCATTGAAAAGGGGCAATTTCACCAGGAACGAACAAAACCCAACCCTGGAGATATTGTAGAGGAAGAGGATCTACTAGCACTACTAAGAGAGGAAGATTCTGCTGAAGACAAGATGATACAGACAGACATTAGCGACGCTGATTTGGAGCGTATTTTAGACCGCTCTGATCTGATTGCCCCATCTGGTTCAGACAATGAGAAATCTAAAGTTTCTGGCGATTTATACCCTCTGAAAGGGCCTGGTTGGGAGGTGGTGACACCAACTTCAACAGGAGGGGTACTCTCTACCCTTAACTCTTAA 2274 41.29 MAVEEKPRADNSAESPTSVLEDEDLCNGEKEIKLEEEIILEAKNGDSSLISKEMAEEEQKLLEARVKEEEAKRLEDSTESAKLNDNQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEEDKKSVEKSSGRGSKRKTAARYNNRKAKRAVAAMLTRSKEGEREEDVNLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTMSAIIYHGDKKQREEIRRKSMPRTVGPKFPIVVTSYEIAMSDAKKFLRHYNWKYLVVDEGHRLKNSKCKLLKELKYIAVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSNEEFESWFDLSGKCHAEEKEETQENRKAQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLSEKGSGHGFKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFRLLDRLLTRLFERKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDVNSSHRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVIEKGQFHQERTKPNPGDIVEEEDLLALLREEDSAEDKMIQTDISDADLERILDRSDLIAPSGSDNEKSKVSGDLYPLKGPGWEVVTPTSTGGVLSTLNS 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26863295 26871438 + CrPI670011_07g012830.1 Cre07g1283 503864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1283 757 FunFam Chromatin complex subunit A 106 428 655 - -
Cre07g1283 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 677 IPR001650 -
Cre07g1283 757 SMART ultradead3 185 380 IPR014001 -
Cre07g1283 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Cre07g1283 757 Pfam Helicase conserved C-terminal domain 511 624 IPR001650 -
Cre07g1283 757 FunFam ATP-dependent DNA helicase DDM1 183 427 - -
Cre07g1283 757 Pfam SNF2-related domain 192 488 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cre07g1283 757 Gene3D - 424 725 IPR027417 -
Cre07g1283 757 PANTHER SNF2/RAD54 HELICASE FAMILY 52 716 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)|GO:0044030(PANTHER)
Cre07g1283 757 MobiDBLite consensus disorder prediction 1 23 - -
Cre07g1283 757 Gene3D - 190 419 IPR038718 -
Cre07g1283 757 SMART helicmild6 540 624 IPR001650 -
Cre07g1283 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 710 IPR027417 -
Cre07g1283 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 418 IPR027417 -
Cre07g1283 757 Coils Coil 52 84 - -
Cre07g1283 757 CDD SF2_C_SNF 500 634 IPR049730 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1283 K19001 - - csv:101214753 1391.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1349 Cre-Chr6:7582831 Cre07g1283 Cre-Chr7:26863295 2.20E-119 dispersed
Cre06g2451 Cre-Chr6:32322846 Cre07g1283 Cre-Chr7:26863295 3.20E-26 dispersed
Cre07g0478 Cre-Chr7:2589417 Cre07g1283 Cre-Chr7:26863295 1.60E-73 dispersed
Cre07g1283 Cre-Chr7:26863295 Cre10g1860 Cre-Chr10:33201876 1.50E-82 dispersed
Cre07g1283 Cre-Chr7:26863295 Cre02g2602 Cre-Chr2:39261056 4.00E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54040 PF00176 SNF2_N 2.40E-64 CL0023 Cre TR