Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1287 ATGACCCACGTGACCGGCAATCTGTTCTCTCACATTCGCCTCCACCTGAGACTCGTTCCCTGGAAAAACAAAGCCCAATCCAAACCCCTATTTTCCGGCCTCCGGCGAGCTTCAAGAGCGGCGGAACTGCTGTCTTCTCTTCCATTTCATTTACACAGGCGATTGCAAAGCGTTAGGCGGAGGTGCCGAAGCAAGATGTGGCGCTGTGTTTCTCGTGGCCTTCGCGCTTCTTCTTCCTTTTCCAGGAAATCATCCCCCAAGGATCACTTCAGATCTCAATTTTCTAGATTCTTCTCCGCCGCTTCGACGGCAGGTCGCTCCTCATACACTGTGGTTGATCACACCTACGATGCGGTTGTGGTAGGCGCGGGTGGTGCAGGGCTTCGAGCTGCTATAGGATTGTCAGAGCATGGATTTAATACTGCTTGCATTACTAAGCTTTTCCCAACTCGTTCTCACACGGTTGCAGCTCAGGGAGGTATAAATGCTGCACTGGGAAACATGACTGAGGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGGAGTGATTGGCTAGGTGATCAGGATGCCATTCAATACATGTGTAGAGAAGCACCGAAAGCAGTAATTGAGCTTGAGAATTATGGACTTCCATTTTCTCGTACTGAAGATGGAAAAATTTATCAACGTGCTTTTGGTGGTCAGAGCCTGGACTTTGGAAAGGGTGGACAGGCATATCGTTGTGCATGTGCTGCTGACCGAACGGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAAGCATAACACACAGTTTTTTGTGGAATTTTTTGCTTTGGATCTTTTAATGAATAGTGATGGTAGCTGCCAGGGAGTGATAGCATTAAATATGGAGGATGGTACACTACATCGGTTCCAAGCTGCATCAACAATTTTGGCTACTGGGGGTTATGGGAGAGCATATTTCTCTGCAACCTCTGCTCATACATGCACTGGAGATGGAAATGCCATGGTTGCACGAGCCGGGCTTCCACTTGAGGATTTGGAGTTTGTGCAGTTTCATCCAACGGGAATATATGGTGCTGGGTGCCTTATTACTGAAGGATCTCGTGGTGAAGGTGGCATTCTTAGGAACAGCGAAGGTGAGCGCTTTATGGAACGATATGCCCCAACAGCAAAGGATCTTGCATCAAGGGATGTTGTCTCAAGATCCATGACTATGGAGATTCGGGAGGGTCGTGGTGTAGGACCACTGAAGGACCACATCTATCTTCATTTAAATCACTTGCCTCCAGATGTACTGAAGGAGAGACTTCCGGGTATCTCAGAAACTGCTGCCATTTTTGCTGGCGTTGATGTTACCAAAGAACCCATTCCAGTCTTACCTACAGTGCATTATAATATGGGTGGAATCCCTACGAATCATTATGGAGAGGTTGTTACAATCAAGGGAGATGATCCAGATGCTGTAATTCCAGGATTGATGGCTGCTGGGGAGGCCGCTTGTGCCTCAGTTCATGGTGCCAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTAGCAGAGATCAGGGCACCGCAAAAGCCGTTGGAAAAAGATGCTGGTGAGAAGACTATTGCATGGCTAGATAAATTAAGAAACTCAAATGGTTCACTGCCCACCTCAAAGATTCGGTTGAACATGCAACGAATTATGCAAAACAATGCTGCTGTTTTCCGAACACAGGAGACCTTGGAAGAAGGTTGCAAATTAATTGACCAGGCCTGGGAGAGTTTCCATGATGTGAAGGTCGTGGACAGGGATTTAATATGGAACACTGATTTGATAGAGACGATTGAATTGGAAAATCTTTTGATAAATGCATGTATTACCATGCACTCTGCTGAAGCCAGGAAAGAAAGCAGAGGAGCACATGCTCGAGAAGATTTCTCAAAAAGAGATGATGAGAACTGGATGAAACACACACTGGGATTCTGGGAGAATGAGAAGGTCAGACTGGACTATAGGCCAGTGCACATGAACACATTGGACGATGAGGTCGAATCATTCCCTCCCAAGGCTCGTGTATACTGA 2094 46.94 MTHVTGNLFSHIRLHLRLVPWKNKAQSKPLFSGLRRASRAAELLSSLPFHLHRRLQSVRRRCRSKMWRCVSRGLRASSSFSRKSSPKDHFRSQFSRFFSAASTAGRSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEFFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIRAPQKPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGCKLIDQAWESFHDVKVVDRDLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFSKRDDENWMKHTLGFWENEKVRLDYRPVHMNTLDDEVESFPPKARVY 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26983371 26994275 + CrPI670011_07g012870.1 Cre07g1287 503868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1287 697 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 536 652 - -
Cre07g1287 697 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 355 458 - -
Cre07g1287 697 Gene3D - 117 524 IPR036188 -
Cre07g1287 697 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 649 697 - -
Cre07g1287 697 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 459 524 - -
Cre07g1287 697 Gene3D succinate dehydrogenase protein domain 648 697 - -
Cre07g1287 697 SUPERFAMILY FAD/NAD(P)-binding domain 107 536 IPR036188 -
Cre07g1287 697 NCBIfam succinate dehydrogenase flavoprotein subunit 114 697 IPR011281 GO:0006099(InterPro)|GO:0016627(InterPro)|GO:0050660(InterPro)
Cre07g1287 697 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 151 160 IPR003952 GO:0016491(InterPro)
Cre07g1287 697 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 556 697 IPR037099 GO:0016491(InterPro)
Cre07g1287 697 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 100 697 IPR030664 GO:0000104(PANTHER)|GO:0005749(PANTHER)|GO:0006121(PANTHER)|GO:0008177(PANTHER)|GO:0009055(PANTHER)|GO:0050660(PANTHER)
Cre07g1287 697 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 106 330 - -
Cre07g1287 697 Gene3D - 537 647 - -
Cre07g1287 697 Pfam FAD binding domain 117 513 IPR003953 -
Cre07g1287 697 Pfam Fumarate reductase flavoprotein C-term 565 697 IPR015939 GO:0016491(InterPro)
Cre07g1287 697 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 345 463 IPR027477 -
Cre07g1287 697 PIRSF SDHA_APRA_LASPO 107 687 - -
Cre07g1287 697 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 117 697 IPR014006 GO:0016627(InterPro)|GO:0022900(InterPro)|GO:0050660(InterPro)
Cre07g1287 697 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 355 458 IPR027477 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1287 K00234 - - csv:101211616 1202.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0998 Cre-Chr7:12380028 Cre07g1287 Cre-Chr7:26983371 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41