Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1290 ATGACAGGAGCTTCCGCTTCCGGGTTCTTAAGCTCTCTACTTACTTCAGGTTGTCTTGCTAGACATTGTGCTCCATTGCTGATTGATATGTTTCGTTTAAAGAAGCATTCTCAAAGTCATAATCACCAGGATAATGATTCTATACAAGAAGACGGGAAGATCAATGAACTTAGAGCTGCTCTAGGGCCTCTGTCTAGTCGAAGTTTAAAGTATTGCACCGATGCATGTCTGAGGAGATATTTGATAGCTCGAAACTGGAATGTTGAAAAGGCAAGGAAAATGCTTGAAGAGACGCTCAAGTGGAGGGCAGCTTACAAGCCCGAAGAAATCCGTTGGCATGAAGTTGCATTTGAAGGCGAGACTGGGAAAGTGTCGAGAGCAAATTTTTACGATCGACATGGAAGATCTGTGCTCATAATGAGACCAGGAATGCAGAACACAAGTCCATCAGAAGCTAGTGTGCGGCATCTGGTCTATCTTTTGGAGAATGCGATTCTGAACCTTGGTGAGGGTCAGGAACAAATGTGTTGGTTAATAGATTTCAGCGGATTTACAATGAAAACCAATGTCTCTGTCAAAATAGCTGGAGATATTATCAATGTTTTGCAGAACCATTACCCCGAGAGACTTGCCTTTGCATTCCTCTACAATCCACCCAAGATTTTTCAAGCCTTCTGGAAGGCTATAAAGTATTTCTTAGATCCCAAGACATTTCAAAAGGTAAAGTTTGTAAACCCCAAAGACAAAGGAAGTGTGGAGCTGATGAAATCACACTTTGACATGGAAAACCTTCCCAGTGTCTTTGGAGGTAAAGCCACACTCGAATATGATCACCAGCAGTTCTCCCAGATGATGACCCAAGACGAGCTTAAAGCTGCCCAGTTTTGGGGCTTTGATGACAAGGCCCACCATATTGTAAATGGGCCTTCTTCTGGCCCAGAAGTTGCACCAGAGCCCATTACTCCAACTAACTGA 975 43.38 MTGASASGFLSSLLTSGCLARHCAPLLIDMFRLKKHSQSHNHQDNDSIQEDGKINELRAALGPLSSRSLKYCTDACLRRYLIARNWNVEKARKMLEETLKWRAAYKPEEIRWHEVAFEGETGKVSRANFYDRHGRSVLIMRPGMQNTSPSEASVRHLVYLLENAILNLGEGQEQMCWLIDFSGFTMKTNVSVKIAGDIINVLQNHYPERLAFAFLYNPPKIFQAFWKAIKYFLDPKTFQKVKFVNPKDKGSVELMKSHFDMENLPSVFGGKATLEYDHQQFSQMMTQDELKAAQFWGFDDKAHHIVNGPSSGPEVAPEPITPTN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27077399 27083159 + CrPI670011_07g012900.1 Cre07g1290 503871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1290 324 SMART CRAL_TRIO_N_2 73 98 IPR011074 -
Cre07g1290 324 Pfam CRAL/TRIO domain 130 270 IPR001251 -
Cre07g1290 324 CDD SEC14 131 271 IPR001251 -
Cre07g1290 324 PANTHER GH16843P 35 302 IPR052578 GO:0008526(PANTHER)
Cre07g1290 324 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 130 276 IPR001251 -
Cre07g1290 324 SUPERFAMILY CRAL/TRIO N-terminal domain 40 114 IPR036273 -
Cre07g1290 324 FunFam Phosphatidylinositol transfer protein 3 33 305 - -
Cre07g1290 324 Pfam CRAL/TRIO, N-terminal domain 72 97 IPR011074 -
Cre07g1290 324 SUPERFAMILY CRAL/TRIO domain 112 285 IPR036865 -
Cre07g1290 324 SMART sec14_4 118 273 IPR001251 -
Cre07g1290 324 Gene3D - 28 304 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1290 K26544 - - csv:101209886 554.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2079 Cre-Chr5:32709282 Cre07g1290 Cre-Chr7:27077399 7.20E-108 dispersed
Cre07g1290 Cre-Chr7:27077399 Cre11g1951 Cre-Chr11:31301400 5.30E-69 dispersed
Cre07g1290 Cre-Chr7:27077399 Cre04g1561 Cre-Chr4:34219556 6.40E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82