Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1297 ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTGGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTTCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATAGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 678 47.79 MSGHKRNFTTTAAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSLGNQNQNQGNQKSFNIIDGVGFGESLRSFNMNGVHENGEGNRARAIAAHLQQSSGW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27235767 27236444 - CrPI670011_07g012970.1 Cre07g1297 503878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1297 225 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Cre07g1297 225 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Cre07g1297 225 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Cre07g1297 225 FunFam Nuclear transcription factor Y subunit B-3 26 149 - -
Cre07g1297 225 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1297 225 MobiDBLite consensus disorder prediction 1 33 - -
Cre07g1297 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Cre07g1297 225 Coils Coil 113 133 - -
Cre07g1297 225 Gene3D Histone, subunit A 24 157 IPR009072 GO:0046982(InterPro)
Cre07g1297 225 SUPERFAMILY Histone-fold 34 136 IPR009072 GO:0046982(InterPro)
Cre07g1297 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 171 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1245 Cre-Chr2:13198053 Cre07g1297 Cre-Chr7:27235767 1.80E-46 dispersed
Cre07g1297 Cre-Chr7:27235767 Cre10g0657 Cre-Chr10:6228589 5.00E-42 dispersed
Cre07g1297 Cre-Chr7:27235767 Cre10g2172 Cre-Chr10:36251410 1.90E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54042 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1297 K08065 - csv:101214273 408.297