Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre07g1303 | ATGAACTCATCATCCACAAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCTCTCCACCATATTGGAATGTGGGGAGAAACCTTTAGAACCAGTGCCAATTTAGATGCACAATCCTCCTTTATTATTGAAGCTGATACCAAGCTAGAAACTCAGTCGGATGATGCTTCACTCGGCTCACTTGGAGATCCTCATGTATATGACCAAGATGATACCAAACGCATTGATAAGATTCAAAGACGGCTGGCACAAAATCGGGAAGCAGCTCGCAAAAGCCGGCTGCGGAAAAAGGCCTATATTAAGCAATTGGAAACAAGCCGTGTAAAACTCATTCAATTGGAGCAAGAGCTTGAAAAGGCAAGACAACAAGGTCTCTTGGCTGGATCCCGATTTGACAATAACCAGTTGGGTTTATCAGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGGTGGAGGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTTGTCGAAAATGCAATGAGACACTACTTTAAATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACATCGGCCGAAAGACTTTTCTTATGGATTGGAGGATTTCGGCCTTCAGAACTCCTCAAGGTTTTGATACCTCAGCTGGAGACATTAACCGAACAACAAATTTCGGAAACTGGTAGCCTTAGGAAATCTTGTCTACAAGCAGAAGATGCTCTTAGACAAGGTATGGAAAAACTACAACAAAACCTATTTGAGAGCGTAGTGGCTGGTCAGCTGGGTGAAGGAAGTCATCCTCTACAAATGACTGCTGCAATGGAGAGATTAGAAGCGCTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACGACTCGACAATCTGCTCAAGGCCTTCTTATTCTTGGGGAGTTTTTCCAACGACTCCGAGCATTGAGCTCACTTTGGGCTAATCGTCCTTCCGCACATCACCACCCGCCCACAACCCAAGGTTTTCAATCCTCTCTCCCGCCGGCAGCCAATCTCACGGTCTTTGATCTCTTTCTTCTCTCTTCATCTTCACCGTCGTCACTATTATGCTCCAATCTTCCATCCTCTGGGCAATTTCAGTTCAAAATCTTGTCAAGTCCAGTGGTTTCAAACAGGGGGTTAATGTACGCTCTGAGACCATCATTCTCTGTTTCCTCTCGCCTTAATCCTCCTTCCTTCCTCCGAATTGATCCATTTTTGTGTTATTTCTTCTCTTCTTCTTCCCAAACCCAAGCCTCTGCTTCAAATGGAATCGTCATCCAATACCTCATCGATACCTTCCAACTGTCCCCCGCCAGAGCGGTGTCGATTATGAGCACCCGTAGAGGCCTTCAATCAACTGAAAAGCCTCAATCTGTGTACAGATATCTTTCAGAGCTTGGATTCTCCGACGCCCACATTAAATCGGCGATTCGAATCACGCCGCAGATCGCGTTTTCCAGCATTGAGAAAACTCTGAAGCCAAAGATAGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTAAGTTCATTTCCAGGCATTCTGCGCTTTTAACTGTTAGTTTGGAGAAGAAATTGATGCCCAGTGTTGAGATTCTTAAGAATGTTTTCCACAAGGATATTTGTAGTAACGATCTCTTGCTAGTTATGCAGCGATGTTCTTATGCTATTATGAGATCCCCATATAAAAGGTTGTCTGTAAATATTAACTACTTACAAAGTTGTGGGATTGTTGATTCTCAACTCTCGATGTTACTGAAGAGACAACCTGGCCTTTTTTGTAATCGTGAATCTCGAGTTAAAGATATTGTTTCCATGGTTGTAGAAACTGGTTTTTCTACCAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCTACCTTTAACAAGAAAGTGGAGCTGATTTGTAGCTTTGGAATAACCGAGAAAGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGGTAAGGACCTCCATTGGTAAACTTAAGCTTGGTTTAGAATTTTTCATGAACGAGGCAAAAGTTGGCAAATCAGATATTGTTCGTAATCCTGCTTGTTTGATGCACGCAATGCAGGGGAGAGTCCTCCCTCGTTATAGAGTTCTACAGATTGTGAAGTTGAAGAGGCTAAAGAAGAAGCACCCGAAATTAATCGCTACATTGGGGATGTCTGATGAGGATTTCTTGGATAAATTTGTCTGTAAATTTCCTGATAATATGAAAGAATTGTTGGTGGCCTTTAGAGGTGATTCTGTGGGTGCATTGCAGCCTAAGGAGTTAGCAACATGA | 2442 | 42.55 | MNSSSTKFYNPGRMGLYEPLHHIGMWGETFRTSANLDAQSSFIIEADTKLETQSDDASLGSLGDPHVYDQDDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRVKLIQLEQELEKARQQGLLAGSRFDNNQLGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTEQQISETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSHPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSSLWANRPSAHHHPPTTQGFQSSLPPAANLTVFDLFLLSSSSPSSLLCSNLPSSGQFQFKILSSPVVSNRGLMYALRPSFSVSSRLNPPSFLRIDPFLCYFFSSSSQTQASASNGIVIQYLIDTFQLSPARAVSIMSTRRGLQSTEKPQSVYRYLSELGFSDAHIKSAIRITPQIAFSSIEKTLKPKIEFFQNLGLVGSDLGKFISRHSALLTVSLEKKLMPSVEILKNVFHKDICSNDLLLVMQRCSYAIMRSPYKRLSVNINYLQSCGIVDSQLSMLLKRQPGLFCNRESRVKDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFNKKVELICSFGITEKECMRMFTSAPVLVRTSIGKLKLGLEFFMNEAKVGKSDIVRNPACLMHAMQGRVLPRYRVLQIVKLKRLKKKHPKLIATLGMSDEDFLDKFVCKFPDNMKELLVAFRGDSVGALQPKELAT | 813 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 27361399 | 27371667 | - | CrPI670011_07g013030.1 | Cre07g1303 | 503884 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre07g1303 | 813 | FunFam | Mitochondrial transcription termination factor-like | 566 | 791 | - | - | |
| Cre07g1303 | 813 | Coils | Coil | 97 | 124 | - | - | |
| Cre07g1303 | 813 | Gene3D | - | 77 | 127 | - | - | |
| Cre07g1303 | 813 | Pfam | bZIP transcription factor | 77 | 115 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 2 | 359 | - | - | |
| Cre07g1303 | 813 | ProSiteProfiles | DOG1 domain profile. | 147 | 357 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
| Cre07g1303 | 813 | SMART | mt_12 | 696 | 727 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | SMART | mt_12 | 627 | 657 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | SMART | mt_12 | 728 | 759 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | SMART | mt_12 | 552 | 584 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | SMART | mt_12 | 516 | 547 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | SMART | mt_12 | 591 | 622 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | SMART | mt_12 | 661 | 691 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | Pfam | mTERF | 672 | 780 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | Pfam | mTERF | 588 | 683 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | Pfam | mTERF | 504 | 659 | IPR003690 | GO:0003690(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | SUPERFAMILY | Leucine zipper domain | 78 | 119 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 76 | 120 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | SMART | brlzneu | 74 | 136 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | Pfam | Seed dormancy control | 164 | 239 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
| Cre07g1303 | 813 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 81 | 96 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cre07g1303 | 813 | Gene3D | Transcription termination factor 3, mitochondrial | 584 | 793 | IPR038538 | - | |
| Cre07g1303 | 813 | FunFam | BZIP family transcription factor | 77 | 126 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g1119 | Cre-Chr1:20413933 | Cre07g1303 | Cre-Chr7:27361399 | 2.20E-71 | dispersed | |
| Cre07g1303 | Cre-Chr7:27361399 | Cre11g1250 | Cre-Chr11:10870287 | 3.00E-92 | dispersed | |
| Cre07g1301 | Cre-Chr7:27312827 | Cre07g1303 | Cre-Chr7:27361399 | 1.10E-204 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 54044 | PF02536 | mTERF | 1.40E-14 | No_clan | Cre | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre07g1303 | K14431 | - | csv:101208419 | 673.315 |