Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1309 ATGGCTCTCTCCTCTTATCTGCAGCAAGGGAAGAAAATCAAAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAACTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTAGTCACTTATCTCCTTATGATCGTCCAAATGGGATTGAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGGCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATGAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 990 41.82 MALSSYLQQGKKIKNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSSHLSPYDRPNGIELYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNMNVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27468952 27477528 + CrPI670011_07g013090.1 Cre07g1309 503890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1309 329 Gene3D - 11 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 ProSiteProfiles MADS-box domain profile. 12 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 Coils Coil 104 124 - -
Cre07g1309 329 SMART madsneu2 3 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 PRINTS MADS domain signature 12 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 PRINTS MADS domain signature 27 48 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 217 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre07g1309 329 MobiDBLite consensus disorder prediction 298 329 - -
Cre07g1309 329 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 SUPERFAMILY SRF-like 12 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1309 Cre-Chr7:27468952 Cre08g0046 Cre-Chr8:1162935 5.10E-11 dispersed
Cre07g1309 Cre-Chr7:27468952 Cre05g2586 Cre-Chr5:37031757 2.20E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54045 PF00319 SRF-TF 2.50E-14 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1309 - - - 0.0