Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1309 ATGGCTCTCTCCTCTTATCTGCAGCAAGGGAAGAAAATCAAAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAACTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTAGTCACTTATCTCCTTATGATCGTCCAAATGGGATTGAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGGCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATGAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 990 41.82 MALSSYLQQGKKIKNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSSHLSPYDRPNGIELYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNMNVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27468952 27477528 + CrPI670011_07g013090.1 Cre07g1309 503890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1309 329 Gene3D - 11 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 ProSiteProfiles MADS-box domain profile. 12 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 Coils Coil 104 124 - -
Cre07g1309 329 SMART madsneu2 3 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 PRINTS MADS domain signature 12 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 PRINTS MADS domain signature 27 48 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 217 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre07g1309 329 MobiDBLite consensus disorder prediction 298 329 - -
Cre07g1309 329 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 46 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1309 329 SUPERFAMILY SRF-like 12 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1309 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1309 Cre-Chr7:27468952 Cre08g0046 Cre-Chr8:1162935 5.10E-11 dispersed
Cre07g1309 Cre-Chr7:27468952 Cre05g2586 Cre-Chr5:37031757 2.20E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1157 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.8e-50 196.8
Cre07g1309 . 12 163 Type I MADS-box Gene Family AT1G77950 57.0 7.4e-42 167.9
Cre03g2051 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 1.3e-54 210.7
Cre01g0944 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.7e-46 183.7
Cre10g1157 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.8e-50 196.8
Cre07g1309 . 12 163 Type I MADS-box Gene Family AT1G77950 57.0 7.4e-42 167.9
Cre03g2051 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 1.3e-54 210.7
Cre01g0944 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.7e-46 183.7
Cre10g1157 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.8e-50 196.8
Cre03g2051 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 1.3e-54 210.7
Cre01g0944 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.7e-46 183.7
Cre07g1309 . 12 163 Type I MADS-box Gene Family AT1G77950 57.0 7.4e-42 167.9
Cre10g1157 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.8e-50 196.8
Cre03g2051 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 1.3e-54 210.7
Cre01g0944 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.7e-46 183.7
Cre07g1309 . 12 163 Type I MADS-box Gene Family AT1G77950 57.0 7.4e-42 167.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54045 PF00319 SRF-TF 2.50E-14 No_clan Cre TF