Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g1309 | ATGGCTCTCTCCTCTTATCTGCAGCAAGGGAAGAAAATCAAAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACATCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAACTAAGGTTATTTGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTCTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTAGTCACTTATCTCCTTATGATCGTCCAAATGGGATTGAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGGCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCACAGTTTATGATCAAGTATCACAAGCAACAAACATGAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA | 990 | 41.82 | MALSSYLQQGKKIKNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSSHLSPYDRPNGIELYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTTVYDQVSQATNMNVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 27468952 | 27477528 | + | CrPI670011_07g013090.1 | Cre07g1309 | 503890 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g1309 | 329 | Gene3D | - | 11 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre07g1309 | 329 | ProSiteProfiles | MADS-box domain profile. | 12 | 50 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre07g1309 | 329 | Coils | Coil | 104 | 124 | - | - | |
Cre07g1309 | 329 | SMART | madsneu2 | 3 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre07g1309 | 329 | PRINTS | MADS domain signature | 12 | 27 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre07g1309 | 329 | PRINTS | MADS domain signature | 27 | 48 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre07g1309 | 329 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 12 | 217 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre07g1309 | 329 | MobiDBLite | consensus disorder prediction | 298 | 329 | - | - | |
Cre07g1309 | 329 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 12 | 46 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre07g1309 | 329 | SUPERFAMILY | SRF-like | 12 | 74 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g1309 | Cre-Chr7:27468952 | Cre08g0046 | Cre-Chr8:1162935 | 5.10E-11 | dispersed | |
Cre07g1309 | Cre-Chr7:27468952 | Cre05g2586 | Cre-Chr5:37031757 | 2.20E-14 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54045 | PF00319 | SRF-TF | 2.50E-14 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g1309 | - | - | - | 0.0 |