Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1328 ATGATGGTGGAGTTCCATGGAGAAATCCGAGACCCCAACGATGGTGAAGACCAAGAACATCAAGAACAAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAAAGATCGACAAAGGTTGAAGAAGATGAAGGAGAAGCGTGATGATGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATCATGGAAGCTTGTAAGGCACAAGGGTTTGTTTATGGCATCGTCCCCGAAAAGGGTAAGCCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGGAATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCAAAATTCCTCCCCAAAGTAATCGAAGAATCAGGGCTCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTAGGCTCCATTCTCTCTGCTCTGATGCAGCACTGTATTCCCCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGTAACGAGCTTTGGTGGGGAGAACAGGGTCCCGCCGGTGGGCATGGTGTTCCGCCGTACAAAAAGCCCCACGACCTCAAAAAGGCTTGGAAAATCAGTGTCCTGGCGGCGGTGATCAAACACATGTCCCCTGATATGGACAACATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCAAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTCACAATTAACCAAAAAAAAACTCAAAATCACACCCGACGTAGAAGAAGAAGAAGAAGAAGAAAAAGAACACGAGAAAAACAGAGGCGAACAGGGCACGGATGGAATTATGGAGAAACGAAAGTGCATATTCGAAGAAGAAGCTGTAGCCGATTCGACACTGTACCCTTGCCAGAATCAATGGTGCCCACAGAGCGAGGTGCTGATGGGATTCATGGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATGTACAGAGGCGGGCAGACGGCGGAACAAGAACAATTCTCAGAGGAGCAGTCGATCGACACGCATTTGAAGAGCGTGGTGGATTGGATGAACTGGGAGTTATCAAGAGCAGAGCCGGGCAGCGACGAGGCAATGATCGAAGATGCCGGAGACGGGTCGGGCAGCAGCACGGTGGAGGATTACTGGAATGGCGGCGCGGTGGAGGAGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGGGCGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATACGAATGGGCTGAGGAATGA 1389 50.25 MMVEFHGEIRDPNDGEDQEHQEQEEEISYDDLKKRMWKDRQRLKKMKEKRDDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRNDVRFEQDAPMAIAKFLPKVIEESGLDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGPAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALSQLTKKKLKITPDVEEEEEEEKEHEKNRGEQGTDGIMEKRKCIFEEEAVADSTLYPCQNQWCPQSEVLMGFMDKNARTEHETQCMYRGGQTAEQEQFSEEQSIDTHLKSVVDWMNWELSRAEPGSDEAMIEDAGDGSGSSTVEDYWNGGAVEEAFEMQRRSMDLNASPAEDLGAQQDATSIWDLRYEWAEE 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28038929 28040317 + CrPI670011_07g013280.1 Cre07g1328 503909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1328 462 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 15 385 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Cre07g1328 462 MobiDBLite consensus disorder prediction 44 67 - -
Cre07g1328 462 Pfam Ethylene insensitive 3, DNA-binding domain 30 269 IPR047091 GO:0003700(InterPro)
Cre07g1328 462 SUPERFAMILY DNA-binding domain of EIN3-like 148 271 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cre07g1328 462 MobiDBLite consensus disorder prediction 393 412 - -
Cre07g1328 462 MobiDBLite consensus disorder prediction 1 17 - -
Cre07g1328 462 FunFam Ethylene insensitive 3-like 1 142 279 - -
Cre07g1328 462 Coils Coil 29 49 - -
Cre07g1328 462 Gene3D - 58 141 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cre07g1328 462 Gene3D - 142 278 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cre07g1328 462 MobiDBLite consensus disorder prediction 282 304 - -
Cre07g1328 462 MobiDBLite consensus disorder prediction 1 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1328 K14514 - - csv:116406094 715.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1328 Cre-Chr7:28038929 Cre08g0804 Cre-Chr8:21113576 2.90E-84 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g1685 . 2 626 EIL Transcription Factor Family AT2G27050 58.2 1.3e-190 663.3
Cre08g0804 . 8 507 EIL Transcription Factor Family AT2G27050 61.9 1.4e-168 590.1
Cre03g1623 . 44 326 EIL Transcription Factor Family AT2G27050 62.5 3.2e-96 349.7
Cre03g1623 . 44 578 EIL Transcription Factor Family AT1G73730 54.9 7.8e-145 511.1
Cre03g1685 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.9e-105 378.3
Cre08g0804 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.5e-103 373.2
Cre07g1328 . 24 273 EIL Transcription Factor Family AT1G73730 55.3 2.5e-74 276.9
Cre03g1685 . 3 626 EIL Transcription Factor Family AT3G20770 62.5 1.4e-211 733.0
Cre08g0804 . 7 505 EIL Transcription Factor Family AT3G20770 63.4 1.2e-170 597.0
Cre03g1623 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.3e-98 357.8
Cre07g1328 . 25 365 EIL Transcription Factor Family AT5G65100 50.1 1.6e-97 354.0
Cre03g1623 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.9e-70 263.5
Cre07g1328 . 22 365 EIL Transcription Factor Family AT5G10120 54.6 5.5e-99 358.6
Cre03g1623 . 44 290 EIL Transcription Factor Family AT5G10120 54.4 6.8e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54046 PF04873 EIN3 3.00E-110 No_clan Cre TF