Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1357 ATGAGTTACGTGGGGAAATCTCCGATCACTGCCACTGCCGTGAATTATCCGGTGCTGTCTTCCAGTTCCGACAATCTCTCACGATCATCATCTTCTTCAATGGCTGCTCAATCGGTCGGCGAAACGGACGGCAAAGATTTTCCTTCCGACCTCCCTTATCTGTCCGGCTTCAACAACCATTTCTCATCGGAGGCGATTCCCGGCGCTCTTCCTCAATCCCAAAACAGTCCTCTCATATGCCCCTTCGGCCTCTATGCCGAGCAGATCTCCGGCACTTCCTTCACATCGCCTCGGAAAGCTAACTTGTGCAGTTGGCTGTATCGGATTAAGCCGTCGGTCACGCATGAACCGTTTAGGCAACGTTTGCCTAAAAACGAGAAGTTGATCAGTGAATTTAATGCATCAAATTGTTCATCGACTCCGACTCAGCTAAGGTGGAGACCGGCGGATGTTCCTGATTCACCGGTGGATTTCGTTGATGGACTGTACACTGTCTGCGGAGCCGGCAGTTCGTTTCTCCGCCATGGGTTTGCTATTCACATGTACACAGCCAATAAGTCGATGGAGAACTGTGCGTTCTGTAATGCCGATGGCGACTTCTTGATAGTTCCTCAGAGTGGAAGGCTGTGGATTATAACAGAGTGTGGTAGACTGGAAGTTTCTCCAGGTGAAATAGTGGTTTTACCTCAAGGTTTTCGCTTTGTTGTTTATCTGCCTGATGGTCCATCACGTGGCTATGTAGCTGAGATTTTTGGCAGTCATTTCCAGCTTCCTGACCTTGGACCGATAGGTGCTAATGGTCTTGCTGCACCAAGGGATTTCCTTGCGCCTGTAGCCTGGTTTGAAAAGAGTTCTCGTCCTGGTTACACAATTGTTCAAAAATTTGGTGGGGAATTGTTTACTGCGATACAAGACTTTTCTCCCTTTAATGTAGTTGCCTGGCATGGAAATTATGTTCCCTATAAGTACGATCTCAGTAAGTTCTGCCCTTACAATACTGTGTTGTTTGATCACAGTGATCCATCAATAAATACAGTATTAACGGCGCCAACTGATAAACCTGGAGTAGCATTACTCGACTTTGTCATTTTCCCTACCAGATGGCTTGTTGCTGAACACACATTCCGTCCTCCATATTACCATCGTAACTGCATGAGTGAATTTATGGGCCTCATATATGGAGGCTACGAGGCAAAAGCTGATGGGTTCGTTCCCGGAGGTGCCAGCCTTCATAATTGTATGACTCCCCATGGTCCTGATACTAAAACATATGAGGCTACTATTGCTCGAGGGAACGACGTTGGACCACACAAAATCACTGGCACAATGGCGTTTATGTTTGAATCAAGTCTGATCCCTCGTGTATGTTCTTGGGCTCTCGAGTCCCCATTCATGGATCACGACTATTACCAATGCTGGATAGGATTGAAATCTCATTTCAAAAATGAAGGAAGAGGAGATACGGATCCACAGAAGGTAAGAACTGAGTCTGAAAATGGAAGACAAATTGGATAA 1515 46.47 MSYVGKSPITATAVNYPVLSSSSDNLSRSSSSSMAAQSVGETDGKDFPSDLPYLSGFNNHFSSEAIPGALPQSQNSPLICPFGLYAEQISGTSFTSPRKANLCSWLYRIKPSVTHEPFRQRLPKNEKLISEFNASNCSSTPTQLRWRPADVPDSPVDFVDGLYTVCGAGSSFLRHGFAIHMYTANKSMENCAFCNADGDFLIVPQSGRLWIITECGRLEVSPGEIVVLPQGFRFVVYLPDGPSRGYVAEIFGSHFQLPDLGPIGANGLAAPRDFLAPVAWFEKSSRPGYTIVQKFGGELFTAIQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPTRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFVPGGASLHNCMTPHGPDTKTYEATIARGNDVGPHKITGTMAFMFESSLIPRVCSWALESPFMDHDYYQCWIGLKSHFKNEGRGDTDPQKVRTESENGRQIG 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28485017 28490044 + CrPI670011_07g013570.1 Cre07g1357 503938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1357 504 SUPERFAMILY RmlC-like cupins 50 484 IPR011051 -
Cre07g1357 504 FunFam Homogentisate 1,2-dioxygenase 314 451 - -
Cre07g1357 504 CDD cupin_HGO_N 144 252 - -
Cre07g1357 504 Gene3D Jelly Rolls 313 451 IPR014710 -
Cre07g1357 504 MobiDBLite consensus disorder prediction 21 39 - -
Cre07g1357 504 NCBIfam homogentisate 1,2-dioxygenase 51 480 IPR005708 GO:0004411(InterPro)|GO:0006559(InterPro)|GO:0006570(InterPro)
Cre07g1357 504 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 50 483 IPR005708 GO:0004411(PANTHER)|GO:0004411(InterPro)|GO:0005737(PANTHER)|GO:0006559(InterPro)|GO:0006559(PANTHER)|GO:0006570(InterPro)
Cre07g1357 504 MobiDBLite consensus disorder prediction 21 43 - -
Cre07g1357 504 Pfam Homogentisate 1,2-dioxygenase C-terminal 326 480 IPR046451 -
Cre07g1357 504 MobiDBLite consensus disorder prediction 483 504 - -
Cre07g1357 504 Pfam Homogentisate 1,2-dioxygenase N-terminal 53 325 IPR046452 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1357 K00451 - - csv:101206356 968.378
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g149 . . . . . . . . . Cmo04g00599 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1041 Cone15ag1030 . . . . . . . . . . . . . . . Cma04g00562 . Car04g00533 . . Cpe01g00507 . . . . . . . Cla07g00942 Cam07g1018 Cec07g1088 Cco07g1066 Clacu07g0987 Cmu07g0983 Cre07g1357 . . Chy07g00956 Cme07g01326
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009963 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32