Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1362 ATGGCTTCAGTGCTGCAAGGTGGTGGTGATGCGGGAGGGAATCCCAGAAGGACGGATAATGAAAAGTTTAGTGCCGGAAAGCAACAGAAAGAGAGTAAAATTGTTAAACACGTAGCTCGAAATTCCGTTCAGACTCCTACTGTCGCGGCCACTAATGGCGGTGGTAATCCGTCTTCTCCTTCTCATTATCCGATCGATGCTTTAATCACGTCCAGGGATTCTTCGGGTCAAAATCGCTGCATTGAACCGGTTAATGCTGAGGACGTGCCAGGATACACGAGGTTTCAGAACCGGGTTAGGATTAGTTTGAATTCCAGATCGAGGTCTGGGATTAAAGAGCTTACGACGAAGCTGAAGGGTGAGCTTGATCAGGTTAGGAGCCTCGTGAAGAAGTTTGAAACTCAGGAGCTCCAGTTTAGTGGTTATGGTGGTGATGTTGGACATAGTCAGTCACAGTTTTCAGCTAATAATTTGGTAGAGAGGGCTGGTACTGTTAGTACAATGAAGGTTAATTCCGAGGTGGGTTCTGCAGATGTGCCTGCTTCGAGGCTTGTTCGATGTGTTTCGGTGGCAGAAAACTTTGGAGAGTTTGCAGAGAAAGAGATGAGCAAGCATAAAAATTCAAAATATATTTCTACAAAGGAGTTCCCGACGGATTGTAATTTGAATGGAGGTAAGATTGGTCCAGTGCTTAAAAGCTGTAGTAATTTGCTGGAAAGATTGATGAAACATAAATTTGGTTGGGTATTTAATGTGCCTGTTGATGCAAAGCGTTTGGGGCTTCACGATTATCATAAGATCATAAGGAAGCCAATGGATTTGGGTACCATAAAGATGAGACTAAATAAAAATTGGTACAAGTCACCAAGAGAGTTTGCTGAGGATGTGAGACTAACGTTTAGCAATGCCATTACATATAACCCAAAAGGGGAGGATGTTCATACAATGGCAGAGCAGTTGTCTAAGATATTCGAAGAGAAATGGAAGATAATTGAAGGCAAACAAAATGTTGGTAAGGGATTTCAGATGGATGATGGTTCAGTTTTACCTACACCCACCTCTAGGAAATCTCCAGCTCTTGCCACTCCTCCAGTGGAATCGAGAACTTTCAGTAGATCGGATTCTACGACAAAGCCTCCACCTTCAAATAGAGGGATTTTAGGTAAATCGGATTCAATAACAAAACCCCCCAATCCCAAACAGAACCCCACAGATGTTGCTCCTCCTGATAAGAAACCAAAAGCAAAGAATCACGAAATCAGAGATATGACTTATGAAGAAAAACAGAAACTGAGCATTGACCTTCAGGATTTACCATCAGATAAGCTGAATAATGTTGTCAAGATTATCAAGAAAAGAAACCAGGGACTCTTCCAAAACGACGATGAAATTGAGTTGGATATTGGCAGTGTTGATTCCGAAACCTTATGGGAACTTGAGAGGTTTGTGGCAAATCACAAAAGAAGTTTGATCAAGAATAAGAGAAAAGCCGACGCGAATCTTCAATCAGGAGAAAAATGGTCTCACTACTCGACCAATGATACTGATCTAGCAATGGCTAATGCAGGAGGAAAACCTGTAGGTGGCAATGCAGACTCTGAAAATGATAGTTCCTCGACATGTGGGGATGGAAATCAGTCTCCCTCAGTTAGGATTCGCAATGCTCACGTAACGATTCTTATTGTTCTATTATCTTCCAGCATCTACAGTGCATAA 1716 42.25 MASVLQGGGDAGGNPRRTDNEKFSAGKQQKESKIVKHVARNSVQTPTVAATNGGGNPSSPSHYPIDALITSRDSSGQNRCIEPVNAEDVPGYTRFQNRVRISLNSRSRSGIKELTTKLKGELDQVRSLVKKFETQELQFSGYGGDVGHSQSQFSANNLVERAGTVSTMKVNSEVGSADVPASRLVRCVSVAENFGEFAEKEMSKHKNSKYISTKEFPTDCNLNGGKIGPVLKSCSNLLERLMKHKFGWVFNVPVDAKRLGLHDYHKIIRKPMDLGTIKMRLNKNWYKSPREFAEDVRLTFSNAITYNPKGEDVHTMAEQLSKIFEEKWKIIEGKQNVGKGFQMDDGSVLPTPTSRKSPALATPPVESRTFSRSDSTTKPPPSNRGILGKSDSITKPPNPKQNPTDVAPPDKKPKAKNHEIRDMTYEEKQKLSIDLQDLPSDKLNNVVKIIKKRNQGLFQNDDEIELDIGSVDSETLWELERFVANHKRSLIKNKRKADANLQSGEKWSHYSTNDTDLAMANAGGKPVGGNADSENDSSSTCGDGNQSPSVRIRNAHVTILIVLLSSSIYSA 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28532656 28535107 + CrPI670011_07g013620.1 Cre07g1362 503943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1362 571 MobiDBLite consensus disorder prediction 531 548 - -
Cre07g1362 571 MobiDBLite consensus disorder prediction 38 66 - -
Cre07g1362 571 SMART bromo_6 223 333 IPR001487 GO:0005515(InterPro)
Cre07g1362 571 MobiDBLite consensus disorder prediction 1 66 - -
Cre07g1362 571 MobiDBLite consensus disorder prediction 15 37 - -
Cre07g1362 571 Gene3D - 416 496 IPR038336 -
Cre07g1362 571 PANTHER OSJNBA0053K19.4 PROTEIN 52 512 - -
Cre07g1362 571 MobiDBLite consensus disorder prediction 339 421 - -
Cre07g1362 571 Gene3D - 204 343 IPR036427 GO:0005515(InterPro)
Cre07g1362 571 PRINTS Bromodomain signature 261 277 IPR001487 GO:0005515(InterPro)
Cre07g1362 571 PRINTS Bromodomain signature 277 295 IPR001487 GO:0005515(InterPro)
Cre07g1362 571 PRINTS Bromodomain signature 295 314 IPR001487 GO:0005515(InterPro)
Cre07g1362 571 PRINTS Bromodomain signature 245 258 IPR001487 GO:0005515(InterPro)
Cre07g1362 571 ProSiteProfiles NET domain profile. 413 494 IPR027353 -
Cre07g1362 571 MobiDBLite consensus disorder prediction 407 421 - -
Cre07g1362 571 MobiDBLite consensus disorder prediction 347 400 - -
Cre07g1362 571 ProSiteProfiles Bromodomain profile. 242 314 IPR001487 GO:0005515(InterPro)
Cre07g1362 571 Pfam Bromodomain 234 318 IPR001487 GO:0005515(InterPro)
Cre07g1362 571 CDD Bromo_plant1 230 328 IPR037377 -
Cre07g1362 571 Pfam Bromodomain extra-terminal - transcription regulation 423 484 IPR027353 -
Cre07g1362 571 MobiDBLite consensus disorder prediction 517 548 - -
Cre07g1362 571 SUPERFAMILY Bromodomain 221 333 IPR036427 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1362 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2108 Cre-Chr2:34580730 Cre07g1362 Cre-Chr7:28532656 3.10E-57 dispersed
Cre07g1362 Cre-Chr7:28532656 Cre09g1080 Cre-Chr9:11130793 3.80E-86 dispersed
Cre04g2025 Cre-Chr4:37540425 Cre07g1362 Cre-Chr7:28532656 6.00E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48