Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g1372 | ATGGAGTTTCCAATTTCTCTATTCAGGATTCTCGCCTTTCTTCTTCTGTGGATTTTGCTGTGCCATGGATTTGGATCCGACGCTCAGCTTTTGCCTGAATCCGAAGTGAAAACCCTTCAAACAATATCTTCAAAACTAAAGAATCTAAGCTGGAATGTAACCCGGAGTTCTTGCATTCGAGGGGAAGGCTTTTCCAATCAAGCTTTCCTGGGGAACCAAATATTGAGGAATGTCTCATGCAATTGTACTTCCACTCTTTGTCATGTGACAATTATCCTGCTTAAGGGTCTCAATGTAACAGGAACTTTTCCAGCTGAATTTGGTAATCTTACTCATCTGCAGGAACTTGATCTTACTCGCAACCATATTATTGGCCAGCTACCCAGTAGTCTTGCCAATGCTCCTCTAGTCAAACTTTCTCTCTTGGGAAACAGGCTAAACGGTTCAATTCCCAAGGAAATTGGTGACATTGGCACCCTCGAAGAGCTGGTCTTGGAAGACAACCAGCTAACTGGAAGTCTACCTGCCAGCCTTGGAAATCTGCACGGTTTGAGAAGACTGCTTCTGTCTGCAAACAATTTCACAGGAAAAATACCAGACTCATTTGGAAACTTAAAGAACTTGGTTGATTTTAGGATAGACGGGAATGGGCTGTCTGGGAAGATTCCTGAATTCATTGGGAATTTGATCAACCTCGACAGACTGGATATACAAGGAACATCGATGGAAAATCCCATTCCTTCGACAATATCTCAATTGAAGAACCTGACTCAATTGGTCCTGAGGAACTGTTTAATTAATGGCTCAATCCCCGAGTATATTGGAGAAATGAACAAATTATCAACTCTAGATCTAAGCTTCAACCATTTAACTGGTCCAATTCCTGAGACATTTCAGAATCTGATGAAGAAAAAGATAGACTTCATGTTTCTGACAAACAACTCACTGAGTGGTGAAGTGCCTGGTTGGATCTTGAGTAGCAAAAAGAACATAGATTTGTCTTACAACAACTTTTCAGGGTCTACTCTTGCTAGTTGCCAACAATCACCTGTGAACTTGATTGCGAGTTACCCACCTGCAGTGAATCATCAAGTTCCTTGGTGCCTCAAGAAAGACCTTCCATGCTCTGGAAAAGCTGAATATCATTCCTTGTTTATTAATTGTGGAGGAACTAGATTGACGGCTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAACTTCTTTTCTGTTTCAGAAAAATGGGCTTACAGCAGTACAGGAGTTTTTTTGGGTGATGAAAATGCTGACTATATAGCTTCAAATAAGCTTGGCCTGAATGTGAGTGGTCCACGGTATTATCAAAATGCTCGACTTTCCCCTCTCTCCCTCAAATATTATGGCCTTTGCCTGCGGAGCGGAAGCTACAATGTGAAGCTCCACTTTGCTGAAATTATGTACACTAATGATCAAACTTTTAGCAGCCTGGGAAAGCGTATATTCGATATATCAATTCAAGGAAAACTAGTGAAGAAGGATTTCAATATTATGGAGGCAGCTGGGGGTGTTGGTAAGAACTTCACAGTGGAAGATAAAAATGTTCTTGTCAATGGCAGTACCCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTGCCAGACAGAGGAGTTTATGGACCCCTTATTTCTGCTATCACAGTTACGCCAAACTTTGAAATCAATGAGGGAGGTCTATCAGCTGGGGCACTTGCCGGCATCATAATTTCTTCATGTGCAGTAGTCATCATACTGGTCGTAGTATTTCTTTGGATGACAGGTTACATATGTAAGAAGGAAGTCCTAGATAATGAACTTTCTGGTGTAGATTTACAAACGGGTCATTTTACCTTGAAACAAATAAAAGCTGCCACCAACAACTTTGATCCTAAAAGTAAAATAGGCGAAGGTGGATTTGGGCCTGTCTACAAGGGTGTACTGTCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCGAAATCGAAGCAAGGGAGCCGTGAGTTTGTTACTGAGATTGGCATGATATCTGCATTGCAACACCCAAACCTTGTTAAGCTCTATGGCTGCTGCGTTGAGGGAAACCAATTGTTGCTTGTATATGAATACATGGAAAATAATAGTCTTGCCCGTGCACTTTTCGGTCGAGAGGAACAAAGGCTACATCTTGACTGGCGAACAAGGAAGAAGATATGCTTGGAAATAGCTAGGGGATTAGCTTACCTTCATGAAGAATCAAGGTTAAAAATCGTTCACAGAGACATAAAGGCCACAAACGTACTGCTCGATAAAGATCTTAATGCTAAGATTTCTGACTTCGGTTTGGCTAAGCTTGACGAAGAGGAGAACACCCACATCAGCACACGAATTGCTGGAACCATCGGTTATATGGCACCCGAGTATGCAATGAGAGGATACTTGACTGATAAGGCAGATGTTTACAGCTTTGGAATTGTTGCCTTAGAGATAGTTAGTGGGAAAAGTAACACAAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCCTATGTACTGGAAGAGCAAGGCAACCTTCTAGAACTGGTAGATCCAGACCTTGGTTCAAATTACTCATCCGAGGAAGCAATGAGGATGCTGAACGTAGCTCTCTTATGCACCAACCCATCTCCCACTCTCAGACCCGCAATGTCTTCTGTGGTGAGTATGCTTGAGGGTAAGATTGCAGTCCAAGCACCGATCATCAAGCGCACTTCGTCCGGCCAAGATCCAAGGTTTAGAGCCTTTGAGAAGCTCTCACACGACAGCCGATCGCAGGTTTCAAGCTCAACGGTTTCGCTAGATGCTGAGCCTCAAAAAAGCATGTTAATGGATGGGCCATGTACTGATTCTTCAGTGTCCATTGATACCAATGCCAATAATCTCTACCAATCTGCATCAAGTGATCCCCTCCAGAATCATCGTCGAGCTAAGTAA | 2997 | 42.61 | MEFPISLFRILAFLLLWILLCHGFGSDAQLLPESEVKTLQTISSKLKNLSWNVTRSSCIRGEGFSNQAFLGNQILRNVSCNCTSTLCHVTIILLKGLNVTGTFPAEFGNLTHLQELDLTRNHIIGQLPSSLANAPLVKLSLLGNRLNGSIPKEIGDIGTLEELVLEDNQLTGSLPASLGNLHGLRRLLLSANNFTGKIPDSFGNLKNLVDFRIDGNGLSGKIPEFIGNLINLDRLDIQGTSMENPIPSTISQLKNLTQLVLRNCLINGSIPEYIGEMNKLSTLDLSFNHLTGPIPETFQNLMKKKIDFMFLTNNSLSGEVPGWILSSKKNIDLSYNNFSGSTLASCQQSPVNLIASYPPAVNHQVPWCLKKDLPCSGKAEYHSLFINCGGTRLTADGHDYEEDLTTEGKSNFFSVSEKWAYSSTGVFLGDENADYIASNKLGLNVSGPRYYQNARLSPLSLKYYGLCLRSGSYNVKLHFAEIMYTNDQTFSSLGKRIFDISIQGKLVKKDFNIMEAAGGVGKNFTVEDKNVLVNGSTLEIHLYWAGKGTTAVPDRGVYGPLISAITVTPNFEINEGGLSAGALAGIIISSCAVVIILVVVFLWMTGYICKKEVLDNELSGVDLQTGHFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPDLGSNYSSEEAMRMLNVALLCTNPSPTLRPAMSSVVSMLEGKIAVQAPIIKRTSSGQDPRFRAFEKLSHDSRSQVSSSTVSLDAEPQKSMLMDGPCTDSSVSIDTNANNLYQSASSDPLQNHRRAK | 998 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 28615760 | 28627584 | - | CrPI670011_07g013720.1 | Cre07g1372 | 503953 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g1372 | 998 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 716 | 923 | - | - | |
Cre07g1372 | 998 | FunFam | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase | 381 | 570 | - | - | |
Cre07g1372 | 998 | Pfam | Protein tyrosine and serine/threonine kinase | 643 | 909 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre07g1372 | 998 | Gene3D | Ribonuclease Inhibitor | 245 | 355 | IPR032675 | - | |
Cre07g1372 | 998 | ProSiteProfiles | Protein kinase domain profile. | 640 | 922 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre07g1372 | 998 | Pfam | Leucine rich repeat | 159 | 218 | IPR001611 | GO:0005515(InterPro) | |
Cre07g1372 | 998 | SMART | LRR_typ_2 | 157 | 180 | IPR003591 | - | |
Cre07g1372 | 998 | SMART | LRR_typ_2 | 110 | 134 | IPR003591 | - | |
Cre07g1372 | 998 | SMART | LRR_typ_2 | 181 | 204 | IPR003591 | - | |
Cre07g1372 | 998 | SMART | LRR_typ_2 | 277 | 300 | IPR003591 | - | |
Cre07g1372 | 998 | SUPERFAMILY | L domain-like | 72 | 340 | - | - | |
Cre07g1372 | 998 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 247 | 342 | - | - | |
Cre07g1372 | 998 | CDD | STKc_IRAK | 646 | 913 | - | - | |
Cre07g1372 | 998 | Pfam | Malectin domain | 384 | 565 | IPR021720 | - | |
Cre07g1372 | 998 | Pfam | Leucine Rich Repeat | 255 | 276 | IPR001611 | GO:0005515(InterPro) | |
Cre07g1372 | 998 | Pfam | Leucine Rich Repeat | 112 | 133 | IPR001611 | GO:0005515(InterPro) | |
Cre07g1372 | 998 | Pfam | Leucine Rich Repeat | 279 | 301 | IPR001611 | GO:0005515(InterPro) | |
Cre07g1372 | 998 | Gene3D | Ribonuclease Inhibitor | 31 | 244 | IPR032675 | - | |
Cre07g1372 | 998 | SUPERFAMILY | Protein kinase-like (PK-like) | 623 | 923 | IPR011009 | - | |
Cre07g1372 | 998 | Gene3D | Phosphorylase Kinase; domain 1 | 608 | 715 | - | - | |
Cre07g1372 | 998 | MobiDBLite | consensus disorder prediction | 965 | 992 | - | - | |
Cre07g1372 | 998 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 150 | 246 | - | - | |
Cre07g1372 | 998 | SMART | serkin_6 | 640 | 909 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre07g1372 | 998 | Gene3D | Transferase(Phosphotransferase) domain 1 | 716 | 923 | - | - | |
Cre07g1372 | 998 | Gene3D | - | 381 | 570 | - | - | |
Cre07g1372 | 998 | MobiDBLite | consensus disorder prediction | 944 | 998 | - | - | |
Cre07g1372 | 998 | FunFam | probable LRR receptor-like serine/threonine-protein kinase At1g53430 | 609 | 715 | - | - | |
Cre07g1372 | 998 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 762 | 774 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre07g1372 | 998 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 13 | 937 | IPR051824 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0222 | Cre-Chr1:1588716 | Cre07g1372 | Cre-Chr7:28615760 | 3.50E-149 | dispersed | |
Cre07g1372 | Cre-Chr7:28615760 | Cre11g2138 | Cre-Chr11:33088320 | 0.00E+00 | dispersed | |
Cre07g1372 | Cre-Chr7:28615760 | Cre11g2136 | Cre-Chr11:33047180 | 7.60E-199 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64271 | PF07714 | PK_Tyr_Ser-Thr | 2.50E-49 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g1372 | - | - | - | 0.0 |