Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1378 ATGAAGATTCAGTGTAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCAGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCATCTCAGATGCCTAAATGCGATATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCGCTCGAGCCAACTGACCCTGTTGCTTGTTCTTCCATGGATAAGTCACATTCTCGAGAGAAGTCTACTGAGACTAAAGTTAGACCACTGTCCGAAAGGGAATTCTCGATGCCTTCTCCTGATGAACTCAGTAGAAGCTTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACATTGCTTACCGGAGGCGGAGATTCTGTTTCTGGTGGTTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCGCCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGACACTGAATGCTCGGCTCAGGTTCCAGAGGCTTCCTGGACAGTGCCTCAGATTCCCTCTCCACCCACAGCGTCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACCTTCTCGAAACGAAGAAGACAGTTCTAG 897 46.6 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMDKSHSREKSTETKVRPLSEREFSMPSPDELSRSLSVLGGSEDFMANRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDTECSAQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28687336 28689535 - CrPI670011_07g013780.1 Cre07g1378 503959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1378 298 CDD Bbox1_BBX-like 56 99 IPR049808 -
Cre07g1378 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 280 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cre07g1378 298 MobiDBLite consensus disorder prediction 117 135 - -
Cre07g1378 298 FunFam B-box zinc finger protein 22 1 93 - -
Cre07g1378 298 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cre07g1378 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Cre07g1378 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cre07g1378 298 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Cre07g1378 298 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
Cre07g1378 298 Gene3D Classic Zinc Finger 1 92 - -
Cre07g1378 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cre07g1378 298 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Cre07g1378 298 MobiDBLite consensus disorder prediction 115 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1625 Cre-Chr4:34663164 Cre07g1378 Cre-Chr7:28687336 6.90E-20 dispersed
Cre06g0866 Cre-Chr6:1955119 Cre07g1378 Cre-Chr7:28687336 8.40E-35 dispersed
Cre07g1192 Cre-Chr7:24897236 Cre07g1378 Cre-Chr7:28687336 2.40E-21 dispersed
Cre07g1378 Cre-Chr7:28687336 Cre11g0890 Cre-Chr11:6083189 1.50E-30 dispersed
Cre07g1378 Cre-Chr7:28687336 Cre08g1404 Cre-Chr8:27022092 5.30E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54050 PF00643 zf-B_box 3.60E-07 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1378 - - - 0.0