Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1395 ATGTCTCTTCGCAGATCCTTTCTCTCTCGGAAGTTTTCTTCCAACTCCTCCTCTAGAGATCCCAATGCTCTTGGGGCAATTCTTCCGTTGTCCGCCTCGGACTTCGATCATGCCTCCGCTCTGCCCGGAGGGAGTGGCGGCGATCGGATGCAGGCTGAATCCGCTTGGTCTTCCATGCTACCCGAGCTTCTTCGCGAGATCATTCAGCGGGTTGAGGCTTCAGAAGACGCTTGGCCTAACCGCCACAGCGTTGTTTCCTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAAGAGATCGTCAGGGCCACACCTCATTCCGGGAAAATTACTTTCCCTTCTTGCCTCAAACAGCCTGGTCCAAGTGATCTTCCACATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTTCCTTTATCTTGCCCTTACACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCTGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCCTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAACTTTACCATTTTTGACAGTCAACCACCACATAACGGTGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGTCCAAGGCGAATGATATGCTCTCTGAAGTGCCCAGTATCAGAAGACACTGTAACCAGCAAACCTTGTGAGAACTCGAAGATGAAGAAATCCGAATCTCTTTCTTCCTCATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCATGGTCGGGTTACAGTAGCATCTGTTAAAAACTTTCAACTCGTTGCTACTATTGACCATAGCCAGCCAGGAGGTAAAGGGGATGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGACGATACGTTTACTATGGATTATAGGCAGCCGTTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGCTGGCCCTTCTTTTTTGGGCCGAAAGTGAAAAAGGCCGAGGGCCCATTAACGGAAAACTCCCCGATCGGCAGAAGCTCCGAGTGATCTTCTCTCTTCTGCAACGAGTTCGTTTTCGGGAAGCCGAAGTGGAAACAACGATGGAAGCAAAAAGGCGATCGAAGATGAGGATCGCCATAATCCACCCAGACCTTGGTATAGGGGGAGCTGAGAGATTGATTGTGGATGCTGCTGTTGAACTTGCTTCGCATGGACATGATGTCCATATTTTTACATCGCACCACGACAAAAATCGGTGTTTTGAGGAGACCCTTGCTGGAACGTTTCCAGTTACTGTGTATGGTGATTTCCTACCTCGCCACATCTTTTACCGCCTCCATGCAGTTTGTGCATATCTACGGTGTATTTTTGTCACTCTTTGCATGCTGTTCATGTGGCCATCGTTTGATGTCATACTAGCAGATCAGGTTTCTGTTGTTGTTCCAATACTTAAGCTAAAAAGGTCACCAAAGGTTGTATTTTATTGTCATTTTCCGGATCTCTTACTGGCCAAGCACACAACCATTTTGAGGAGGCTGTACAGAAAACCCATAGACTTCATCGAAGAATTGACAACCGGCATGGCAGATTTGATATTGGTTAATAGCAAATTTACGGCGTCCACTTTTGCCAAGACATTCAAACATCTTAATGCACAAGGAATTCGACCTGCTGTTCTTTATCCAGCTGTCAATGTAGATCAGTTTGATGAGCCCCATTCTTCTAAGTTGAGTTTTCTTTCTATCAACCGTTTTGAAAGGAAGAAAAACATTGAATTAGCTATCTCAGCCTTTGCTAAGCTTGGCACACTTGAAGGAGGCACTCTTCAAGATTACAATGTAGCTGATGTTTCCTTGGTCATTGCTGGTGGCTTCGATAAACGGCTAAGAGAGAATGTTGAATACTTGGAGGAGCTCAGGAATTTAGCTGAAAGAGAAGGTGTATGCGAACGTGTTACCTTCATCACATCCTGCTCAACACTCGAAAGAAACGCCCTCCTTTCCCAATGTCTGTGTGTCCTCTACACGCCGAAGGACGAACACTTCGGCATTGTTCCTTTGGAAGCCATGGCAGCTTACAAGCCTGTTATTGCATGCAACAGTGGGGGTCCAGTTGAGACCATAAAACATGGCGCTACCGGATTTCTTTGTTCACCTAATCCTCGAGAGTTCTCTCTGGCAATGGCGAAACTCATTCAGGATCCTGCCATGGCAGCAAGAATGGGTAGGGAAGCCCGACAACACATCATCGAATCTTTCTCTACAAAGATATTTGGTCAGCAACTGAATCAATACCTTGTCGATGTCGCTCGACTTAAGAGAGACTGA 2508 45.73 MSLRRSFLSRKFSSNSSSRDPNALGAILPLSASDFDHASALPGGSGGDRMQAESAWSSMLPELLREIIQRVEASEDAWPNRHSVVSCACVCKRWRDITKEIVRATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIFDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTVTSKPCENSKMKKSESLSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATIDHSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLALLFWAESEKGRGPINGKLPDRQKLRVIFSLLQRVRFREAEVETTMEAKRRSKMRIAIIHPDLGIGGAERLIVDAAVELASHGHDVHIFTSHHDKNRCFEETLAGTFPVTVYGDFLPRHIFYRLHAVCAYLRCIFVTLCMLFMWPSFDVILADQVSVVVPILKLKRSPKVVFYCHFPDLLLAKHTTILRRLYRKPIDFIEELTTGMADLILVNSKFTASTFAKTFKHLNAQGIRPAVLYPAVNVDQFDEPHSSKLSFLSINRFERKKNIELAISAFAKLGTLEGGTLQDYNVADVSLVIAGGFDKRLRENVEYLEELRNLAEREGVCERVTFITSCSTLERNALLSQCLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVETIKHGATGFLCSPNPREFSLAMAKLIQDPAMAARMGREARQHIIESFSTKIFGQQLNQYLVDVARLKRD 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28848010 28857123 - CrPI670011_07g013950.1 Cre07g1395 503976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1395 835 Pfam Glycosyl transferases group 1 635 807 IPR001296 GO:0016757(InterPro)
Cre07g1395 835 SUPERFAMILY F-box domain 52 99 IPR036047 GO:0005515(InterPro)
Cre07g1395 835 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Cre07g1395 835 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Cre07g1395 835 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cre07g1395 835 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Cre07g1395 835 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Cre07g1395 835 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Cre07g1395 835 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Cre07g1395 835 FunFam alpha-1,3/1,6-mannosyltransferase ALG2 433 631 - -
Cre07g1395 835 Coils Coil 686 706 - -
Cre07g1395 835 FunFam alpha-1,3/1,6-mannosyltransferase ALG2 632 814 - -
Cre07g1395 835 Pfam Tub family 117 380 IPR000007 -
Cre07g1395 835 CDD F-box_AtTLP-like 56 100 - -
Cre07g1395 835 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 436 826 - -
Cre07g1395 835 Pfam F-box domain 56 99 IPR001810 GO:0005515(InterPro)
Cre07g1395 835 CDD GT4_ALG2-like 436 822 - -
Cre07g1395 835 Gene3D Glycogen Phosphorylase B; 633 829 - -
Cre07g1395 835 SUPERFAMILY Tubby C-terminal domain-like 107 384 IPR025659 -
Cre07g1395 835 MobiDBLite consensus disorder prediction 1 20 - -
Cre07g1395 835 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Cre07g1395 835 Gene3D Tubby Protein; Chain A 115 379 IPR025659 -
Cre07g1395 835 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 431 831 IPR027054 GO:0000033(PANTHER)|GO:0004378(InterPro)|GO:0006486(InterPro)|GO:0006490(PANTHER)|GO:0012505(PANTHER)
Cre07g1395 835 Pfam Glycosyltransferase Family 4 447 627 IPR028098 -
Cre07g1395 835 Gene3D Glycogen Phosphorylase B; 432 632 - -
Cre07g1395 835 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1395 Cre-Chr7:28848010 Cre08g0649 Cre-Chr8:19438036 4.50E-96 dispersed
Cre07g1395 Cre-Chr7:28848010 Cre05g0707 Cre-Chr5:6252309 9.40E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54052 PF01167 Tub 2.70E-102 CL0395 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1395 K03843 - csv:101211733 771.541