Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1399 ATGGCAATTTCCCATTTAGTACCTTATTATTCGCCTCTTCTACGCTTTTCTCTCGCTTCGACAAAGCTCACTCCTCAACTCCATTCTCACAGATACCGCTTCTTCTCCCTCCGTGCTTCTATGGCGTCTTCACCTGCTCGCAAGGTTTTGGTTCCGGTTGCCAACGGCACCGAGCCGCTTGAGGCAGTCATCACCATTGACGTGCTTCGACGTGCTGGAGCTGATGTTACCGTTGCTTCCGTCGAGAATCATATTCGTGTTGATGCTGCGCATCAGATCAAGATTGTTGCGGATTCTCTCATTTCCGATTGCGCGGATACTGTTTTCGATCTCATCGCCCTTCCTGGAGGTATGCCAGGTGCTACCAGTCTTAGAGATTGTGAAGTTTTGCAGAACATAGTGAAGAAGCAAGCTGCAGATGGTCGACTTTATGCTGCCATCTGTGCTTCACCTGCAGTGGTGCTTGGATCATGGGGTTTGCTGAAGGGGTTGAAAGCCACATGCTATCCATCATTTATGGAGCAACTGGGATCTACTGCAACTGCTGTTGAATCCCAAGTACAGATTGATGGCCAAGTTGTGACAAGTCGTGGGCCTGGTACTACCTTGGAGTTTGCCGTTGCTCTGGTTGAGCAGCTGTATGGGAAAGAAAAAGCCGACGAAGTTTCTGGACCTCTGTTGTTGCGTTCCAACCATGGTCATGAATATACCATAGCTGAGCACAATCAAGTAAAGTGGACATTTGATGATGGCCCGAGGATTCTTGTACCTATAGGTAATGGTACTGAGGAAATGGAGGCTGTTATGATCATTGACATTCTTCGGAGAGCAAAAGGGAAAGTGGTGGTGGCTTCTGTTGAGGACAAACTAGAGATTCTTGCATCTCGAAAAGTTAAACTGGAGGCAGATTTACTCCTTGACGAAGCTGCTGAAAAGTCATACGATCTAATTGTTTTGCCTGGAGGGCTTGGTGGCGCGGAAGCATTTGAAAAATCTGAAAAACTGATTAATTTGCTAAAAAAGCAGAGAGAATCAAACAAACCCTATGGAGCAATATGTGCATCCCCGGCTTTGGTCTTAGAACCCCACGGCTTGCTGAAGAATAAGAAAGCCACTGCTTTTCCTGCATTATGTGACAAATTGTCCGACAAAAGCGAAATTGAAAACAGAGTGGTGGTTGACGGAAACCTGATTACAAGCCGGGGACCTGGAACTACGATGGAATTTTCTCTGGCAATCGTGGAGAAGCTTTTTGGAAGGGATACAGCAGTTCAACTGGGAAAAACAATGCCGGCGTGGAGTCGAACTCTGTTCTTGTTGCGGTTTGCTTCTTTTCGCGTTTGGCGGCTCAGGAAACCACGACTAAACCAGGCTCTGTTGTTATCTCTCTTTCGTGAGAGAGGAGGCAATTTCTTCAAGCTCTCTCCATCAGGTCAGAACTGTCGGAGACTTGTTGCGGTCGAGAGATTGTTGGATCAGAAGTTGAACATAATAGAAGTTGTGATGCCTTGTTTCTGTTTTAGTTCAAAAAGAAACAGAGATTCGTCGGATGCCCAAACAATTGCAGCAGTTGAAGAGATTTCAAATATTCCGAACGTTCGCTTGTACTCATACGAAGAACTTAGAAAAGCAACTGAAAATTTCAGGTCTGGAAACAAACTTGGGCAGGGAGGTTTTGGATCTGTCTACAAGGGAAGGCTCGGAAATGGAACCCTGGGTGCCATAAAGGTACTGTCCATGGATTCAAGCCAAGGGATGCGGGAGTTTTTGGCAGAAATCAATGTGATCTCAGTTATAAACCACGATAACTTGGTTACGTTGCATGGTTGTTGTGTGGAAGGGCAGCACCGGATCTTGGTCTATCCGTACCTAGAAAATAGCAGTCTTGACAAGATGCTTTTTGGTAGAGGACATGGGAATATTCAATTAAATTGGCAAACGAGGTGCAAAATATGCATTGGCATCGCACAGGGGCTAGCGTTCCTTCATGAGGAGGTTCAGCCGCATGTTATACATAGGGACATCAAGGCAAGCAATATCCTGCTTGATAAGGATTTAACCCCAAAAATTTCTGATTTTGGTCTTGCTAGACTACTCCCTGCTCACTTGACCCATGTTAGTACACGTGTTGCCGGGACAACAGGTTATCTTGCACCTGAATTTGCTATACGGGGGCAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTCTTGGAGATTGTTTGTGGGAGATACAACATAAATAGACGGTTTCCTGCTGAGGAACCATACCTTCTTGAAATGGTATGGGAGCATCATGAGAAAGGGCAATTGCTGGAATTGGTAGACCTATCATTACATGGAGACTATGGGACTGAGGAGGCCTGCAGATATTTAAAAGTTGGTCTTCTCTGCACCCAAGATATGCCAAAACTCCGTCCATCTATGTCGACCGTCGTCAAGATGCTAACAGGTGATATTGATATATCTGATCAAACAATATCAAGACCAGGAATGCTTTCAGAGTTCATGCTTCGAAAAGATGTACTATGCAAGAAGGGCGAGTTAACAACTGAAGACTCAGGAAAGCCAATTGATTCAACTTCATCATCAGGATACATTGACACCTCACATGCTACAATAACCTTCAATTCGATATTTGATCGTAGTAACTGA 2664 44.97 MAISHLVPYYSPLLRFSLASTKLTPQLHSHRYRFFSLRASMASSPARKVLVPVANGTEPLEAVITIDVLRRAGADVTVASVENHIRVDAAHQIKIVADSLISDCADTVFDLIALPGGMPGATSLRDCEVLQNIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLGSTATAVESQVQIDGQVVTSRGPGTTLEFAVALVEQLYGKEKADEVSGPLLLRSNHGHEYTIAEHNQVKWTFDDGPRILVPIGNGTEEMEAVMIIDILRRAKGKVVVASVEDKLEILASRKVKLEADLLLDEAAEKSYDLIVLPGGLGGAEAFEKSEKLINLLKKQRESNKPYGAICASPALVLEPHGLLKNKKATAFPALCDKLSDKSEIENRVVVDGNLITSRGPGTTMEFSLAIVEKLFGRDTAVQLGKTMPAWSRTLFLLRFASFRVWRLRKPRLNQALLLSLFRERGGNFFKLSPSGQNCRRLVAVERLLDQKLNIIEVVMPCFCFSSKRNRDSSDAQTIAAVEEISNIPNVRLYSYEELRKATENFRSGNKLGQGGFGSVYKGRLGNGTLGAIKVLSMDSSQGMREFLAEINVISVINHDNLVTLHGCCVEGQHRILVYPYLENSSLDKMLFGRGHGNIQLNWQTRCKICIGIAQGLAFLHEEVQPHVIHRDIKASNILLDKDLTPKISDFGLARLLPAHLTHVSTRVAGTTGYLAPEFAIRGQATRRTDIYSFGVLLLEIVCGRYNINRRFPAEEPYLLEMVWEHHEKGQLLELVDLSLHGDYGTEEACRYLKVGLLCTQDMPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLCKKGELTTEDSGKPIDSTSSSGYIDTSHATITFNSIFDRSN 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28896595 28911475 + CrPI670011_07g013990.1 Cre07g1399 503980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1399 887 SUPERFAMILY Class I glutamine amidotransferase-like 47 228 IPR029062 -
Cre07g1399 887 Pfam Protein tyrosine and serine/threonine kinase 551 816 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1399 887 ProSiteProfiles Protein kinase domain profile. 548 830 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1399 887 Gene3D - 40 241 IPR029062 -
Cre07g1399 887 Gene3D - 248 435 IPR029062 -
Cre07g1399 887 CDD GATase1_DJ-1 254 417 - -
Cre07g1399 887 SMART serkin_6 548 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1399 887 FunFam Serine/threonine-protein kinase receptor 518 623 - -
Cre07g1399 887 SUPERFAMILY Protein kinase-like (PK-like) 527 819 IPR011009 -
Cre07g1399 887 NCBIfam DJ-1 family glyoxalase III 254 426 IPR006287 -
Cre07g1399 887 NCBIfam DJ-1 family glyoxalase III 48 223 IPR006287 -
Cre07g1399 887 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 481 843 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cre07g1399 887 Pfam DJ-1/PfpI family 47 212 IPR002818 -
Cre07g1399 887 Pfam DJ-1/PfpI family 253 415 IPR002818 -
Cre07g1399 887 CDD STKc_IRAK 554 821 - -
Cre07g1399 887 Gene3D Transferase(Phosphotransferase) domain 1 624 830 - -
Cre07g1399 887 FunFam Protein DJ-1 homolog C 246 433 - -
Cre07g1399 887 CDD GATase1_DJ-1 49 213 - -
Cre07g1399 887 Coils Coil 283 303 - -
Cre07g1399 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 670 682 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1399 887 Gene3D Phosphorylase Kinase; domain 1 519 623 - -
Cre07g1399 887 FunFam Putative LRR receptor-like serine/threonine-protein kinase 624 831 - -
Cre07g1399 887 SUPERFAMILY Class I glutamine amidotransferase-like 253 430 IPR029062 -
Cre07g1399 887 FunFam Protein DJ-1 homolog C 41 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2715 Cre-Chr5:38039352 Cre07g1399 Cre-Chr7:28896595 4.30E-78 dispersed
Cre07g1399 Cre-Chr7:28896595 Cre11g2138 Cre-Chr11:33088320 4.10E-87 dispersed
Cre02g0960 Cre-Chr2:6879095 Cre07g1399 Cre-Chr7:28896595 1.70E-101 transposed
Cre03g0882 Cre-Chr3:7559766 Cre07g1399 Cre-Chr7:28896595 2.90E-91 transposed
Cre07g1434 Cre-Chr7:29393672 Cre07g1399 Cre-Chr7:28896595 4.90E-129 transposed
Cre10g2306 Cre-Chr10:37307713 Cre07g1399 Cre-Chr7:28896595 5.20E-90 transposed
Cre11g2136 Cre-Chr11:33047180 Cre07g1399 Cre-Chr7:28896595 1.90E-80 wgd
Cre04g1994 Cre-Chr4:37315942 Cre07g1399 Cre-Chr7:28896595 3.10E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64272 PF00069 Pkinase 4.00E-43 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1399 K03152 - csv:101212934 772.696