Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1404 ATGGTTGTTCGCTTGCCTGAAACTGACCATTATTACCCGGCACGGGCAGCAGTCATCCATAGAATGATTCATCCATTAAAGAACTTAAGAGGCTGTTGCAGGCAAAGCTTAAGTTGGGAGTGGCAGCCATTGCCATTGCTGCTCATTGAAGTAACTGAGATAGGCATAACCAACAGTAGGAGTCTTGATTTTGGAAGGCATGTTTTGGATTATGTTGCTTGTGGTTGTTCCTCCAATACTCCATTGGATCCACATACGGTTAGGAGTCATGTCAAACTGTCTACTAAGGGTAGAAAGAAGCGACACCAAACTCGAACTTTGATTTGTTCCCGACGAAAGGTTGGCCAGTGCAGAGTGTTTTCAACTACGAAACCAGAAACTATTTTGAATGACATTACTGGTGGTCCTCAACCATTCTTCGAACTGAGGAAGGAGTCCAGAAGCCCAATCGCATCGACAAGTTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTCCTGTCTATGGTTGGTAAGGAGAACCCAGCCTTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTGGTATTCCTGGTGTCAAGAGCAACGGCCGGATTGGTTGGGTTAGAGGAACTCACTGTGGAGCATCGGAGGTTGGCAGAGATCATTGAGATGATCCACACTGCAAGCTTGATACATGATGATGTCTTAGATGATAGCGATATGAGGAGAGGGAAGGAAACCTTGCATCAATTATACGGTACCAGAGTGGCGGTGCTGGCTGGAGATTTCATGTTTGCACAGTCATCGTGGTGTCTTGCTAATCTTGAAAACCTTGAAGTCATTAAGCTTATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCGTCAAGCCTGTTTGATTGTGAGGTTGAGCTGGATGAATATTTGATCAAAAGCTATTATAAAACAGCTTCCTTGATTGCTGCTAGTACCAAAGGTGCTGCGATCTTTAGTGGGGTTGATCGGGATATGACCGAGAAAATGTACGAGTATGGAAAGAATCTTGGTCTCTCATTCCAAATTGTCGATGACATACTGGACTTTACACAATCAACAAAGCAGCTTGGGAAGCCAGCGGGAAGTGATCTGGCTAAAGGAAATCTGACAGCCCCAGTTATATTTGCTCTGGAGAGAGAGCCGAAATTGAAAGACATTATCGAATCAGAATTCAATGAGCCGGGGTCTCTCGAAGAAGCCATCCGCATAGTCAAGAGCAGTGGTGGCATTGAAAGAGCGCAGGAATTAGCTAAACAAAAGGCTGATCTTGCTATCCAAAACCTACAATGCCTTCCACAAAGTACCTTTCGGTTAGCGCTCGAGGATATGATGCTACGGGCCGGCCCAATATTCCGGCCCAATATTCCGGCCCATCTCTTCAACTTCGTCTTCACCAAAGATCCATCGACGACGCTTTCTCCAAGCGAATTACAGAGAAAGTTCGACTCCAGTGAAAAGAGAGGTTCCATGGGACAGTGGAGAAGCATAGTGAAGGAGGCAATCGATCGCTCAGCCATTATAGCCAAGTTCCTCTGCTTGCTTCACGTGTATGGCCCTAGCATGCTCCCAACCTTGAATCTGACCGGCGATGTTCTTTTGGCCGAGCACGTGTCGCACCGAGTGGGCAGGGTTGGCCCTGGCGACGTTGTGCTGGTTCGCTCTCCTCTGAACCCGAGGAAGACGTTGACGAAGCGCATTCTGGGCGTCGAAGGTGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATCGGTATCAGTCGGCTGTGGTTCCGAAAGGGCATGTGTGGATTCAAGGAGATAATGTGTATGCTTCTAGTGATTCGCGGCATTTCGGGCCTGTACCTTACGGTCTGGCCACCAGATTGTTTTGGACCATTGGAACAATGAACTCAGATATACCGAACTTAAAAGATAAATTGCTGACGTGGGCACTGGTGGTGGCGTTAAGTATTGAGGCTTTAGTGAATAAGGCTTTAGTGAGAATGCATATGAAGAGCTGGGGACTTCATTTCGTGGCTATTCTAAATGAGCTATTGCTGTGA 2112 46.69 MVVRLPETDHYYPARAAVIHRMIHPLKNLRGCCRQSLSWEWQPLPLLLIEVTEIGITNSRSLDFGRHVLDYVACGCSSNTPLDPHTVRSHVKLSTKGRKKRHQTRTLICSRRKVGQCRVFSTTKPETILNDITGGPQPFFELRKESRSPIASTSLFEVVADDLQKLNQNLLSMVGKENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRRLAEIIEMIHTASLIHDDVLDDSDMRRGKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCEVELDEYLIKSYYKTASLIAASTKGAAIFSGVDRDMTEKMYEYGKNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALEREPKLKDIIESEFNEPGSLEEAIRIVKSSGGIERAQELAKQKADLAIQNLQCLPQSTFRLALEDMMLRAGPIFRPNIPAHLFNFVFTKDPSTTLSPSELQRKFDSSEKRGSMGQWRSIVKEAIDRSAIIAKFLCLLHVYGPSMLPTLNLTGDVLLAEHVSHRVGRVGPGDVVLVRSPLNPRKTLTKRILGVEGDKVNFFPDPANSNRYQSAVVPKGHVWIQGDNVYASSDSRHFGPVPYGLATRLFWTIGTMNSDIPNLKDKLLTWALVVALSIEALVNKALVRMHMKSWGLHFVAILNELLL 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28939380 28949864 + CrPI670011_07g014040.1 Cre07g1404 503985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1404 703 CDD Trans_IPPS_HT 177 466 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Cre07g1404 703 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 144 466 - GO:0004659(PANTHER)|GO:0008299(PANTHER)|GO:0009507(PANTHER)|GO:0010236(PANTHER)
Cre07g1404 703 ProSitePatterns Polyprenyl synthases signature 1. 236 250 IPR033749 -
Cre07g1404 703 Gene3D Farnesyl Diphosphate Synthase 150 469 IPR008949 -
Cre07g1404 703 Pfam Polyprenyl synthetase 180 425 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Cre07g1404 703 FunFam Inner membrane protease subunit 1 530 655 - -
Cre07g1404 703 SUPERFAMILY LexA/Signal peptidase 536 648 IPR036286 -
Cre07g1404 703 ProSitePatterns Signal peptidases I signature 3. 618 631 IPR019758 GO:0004252(InterPro)|GO:0016020(InterPro)
Cre07g1404 703 Pfam Signal peptidase, peptidase S26 535 598 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cre07g1404 703 Pfam Signal peptidase, peptidase S26 609 638 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cre07g1404 703 Gene3D Umud Fragment, subunit A 529 660 - -
Cre07g1404 703 PRINTS Bacterial leader peptidase 1 (S26A) family signature 584 596 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cre07g1404 703 PRINTS Bacterial leader peptidase 1 (S26A) family signature 531 547 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cre07g1404 703 PRINTS Bacterial leader peptidase 1 (S26A) family signature 613 632 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cre07g1404 703 NCBIfam solanesyl diphosphate synthase 151 466 - -
Cre07g1404 703 CDD S26_SPase_I 538 641 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cre07g1404 703 ProSitePatterns Polyprenyl synthases signature 2. 358 370 IPR033749 -
Cre07g1404 703 SUPERFAMILY Terpenoid synthases 153 467 IPR008949 -
Cre07g1404 703 SFLD Isoprenoid Synthase Type I 182 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1404 K05356 - - csv:101214140 751.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1244 Cre-Chr4:31163107 Cre07g1404 Cre-Chr7:28939380 4.80E-29 dispersed
Cre04g2053 Cre-Chr4:37746963 Cre07g1404 Cre-Chr7:28939380 1.30E-44 dispersed
Cre04g2088 Cre-Chr4:38090867 Cre07g1404 Cre-Chr7:28939380 9.70E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g11 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00987 Cam07g1061 Cec07g1132 Cco07g1109 Clacu07g1033 Cmu07g1026 Cre07g1404 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38