Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1411 ATGGTGGTTTTGTCCAAACCATCAATCCAACAGTTGTCTTCTAATTCCTTCATGAGAAATTCCATGTCATCATCCATGGCTGCTGCTGCTTCTTCCTCTGCAGCATTTTTCTCTGAGGTTCCATTCATAGACCTTTCTGCACCAGATGCTAAACAACTCATTGTCAAAGCTTGTGAAGAGCTTGGATTTTTCAAGGTCGTCAACCATGGCGTTCCCATGGAATTCATTTCTACTCTCGAATCAGAATCCACCAATTTCTTCTCCCTTCCACTCTCTGAAAAACAAAAAGCTGCCCCTCCTTCCCCTTTTGGCTATGGCAACAAGCAAATTGGTCGCAATGGCGACGTCGGTTGGGTCGAATATCTTCTCTTAAACACTCACCTAGAATCCAACTCCGATGGGTTCCTCTCCATTTTTGGCCAAGACCCACAAAAACTCCGCTCTGCTGTGAACAATTACATCTCGGCTGTGAGGAATATGGCGTGTGAAATCCTTGAGTTAATGGCGGAAGGATTGAAGATTCAACAGAGGAATGTGTTCAGTAAGCTGGTGATGGATGAAGAGAGTGACTCTGTTTTCAGGGTGAACCATTATCCGCCATGTCCAGAGCTTCAAGCTTTGAAAGAGAGGAACATGATTGGATTTGGAGAACACACAGACCCACAAATCATATCGGTTTTGAGATCCAACAATACTTCTGGACTACAAATTTCTCTTGCTGATGGGAATTGGATTTCTGTTCCTCCTGATCAGAATTCCTTTTTCATCAATGTTGGTGACTCTTTACAGGTGATGACTAATGGAAGATTCAAAAGTGTGAAGCATAGGGTTTTGACAAACAGCTTGAAGTCAAGAATTTCAATGATATACTTTGGTGGGCCACCTTTGAGTGAAAAGATAGCTCCTTTGCCTTCTCTTATGAAAGGAGAAGAAAGAAGTTTGTACAAAGAGTTTACTTGGTTTGAGTACAAAAGATCAGCTTACAACTCCAGGTTGGCAGATAACAGGCTTGTGCACTTTGAAAGAATTGCAGCCTCATAA 1041 42.36 MVVLSKPSIQQLSSNSFMRNSMSSSMAAAASSSAAFFSEVPFIDLSAPDAKQLIVKACEELGFFKVVNHGVPMEFISTLESESTNFFSLPLSEKQKAAPPSPFGYGNKQIGRNGDVGWVEYLLLNTHLESNSDGFLSIFGQDPQKLRSAVNNYISAVRNMACEILELMAEGLKIQQRNVFSKLVMDEESDSVFRVNHYPPCPELQALKERNMIGFGEHTDPQIISVLRSNNTSGLQISLADGNWISVPPDQNSFFINVGDSLQVMTNGRFKSVKHRVLTNSLKSRISMIYFGGPPLSEKIAPLPSLMKGEERSLYKEFTWFEYKRSAYNSRLADNRLVHFERIAAS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29046583 29048150 + CrPI670011_07g014110.1 Cre07g1411 503992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1411 346 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 188 294 IPR005123 -
Cre07g1411 346 PRINTS Isopenicillin N synthase signature 218 239 - -
Cre07g1411 346 PRINTS Isopenicillin N synthase signature 254 280 - -
Cre07g1411 346 PRINTS Isopenicillin N synthase signature 54 71 - -
Cre07g1411 346 Pfam non-haem dioxygenase in morphine synthesis N-terminal 40 131 IPR026992 -
Cre07g1411 346 Pfam 2OG-Fe(II) oxygenase superfamily 190 292 IPR044861 -
Cre07g1411 346 Gene3D - 3 334 IPR027443 -
Cre07g1411 346 FunFam Gibberellin 2-beta-dioxygenase 1 20 333 - -
Cre07g1411 346 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 38 324 IPR050231 GO:0009416(PANTHER)|GO:0016706(PANTHER)|GO:0045487(PANTHER)|GO:0052634(PANTHER)
Cre07g1411 346 SUPERFAMILY Clavaminate synthase-like 35 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1411 K04125 - - csv:101215820 615.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1038 Cre-Chr3:9342084 Cre07g1411 Cre-Chr7:29046583 4.90E-119 dispersed
Cre04g2068 Cre-Chr4:37866963 Cre07g1411 Cre-Chr7:29046583 8.00E-113 dispersed
Cre07g1411 Cre-Chr7:29046583 Cre09g0469 Cre-Chr9:4464282 8.80E-78 dispersed
Cre11g2126 Cre-Chr11:32949627 Cre07g1411 Cre-Chr7:29046583 1.50E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g898 . . . . . . . . Cmo16g00489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00453 . Car16g00411 Cpe14g00383 . . . . . . . . Cla07g00995 Cam07g1070 Cec07g1142 Cco07g1120 Clacu07g1044 Cmu07g1035 Cre07g1411 . . Chy07g01013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43