Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1427 ATGGAGGACGATTACTCTATCTTCCCTCCCGATTCAGATCTCGATTTCAGTTTCACGTCCACCGCCACCGACCGCACCTTCACCACCTCCTCCAGCGCTCGAACCAGCCTTGCTCGGAGCAGTCTAACACTCAGCTTCAATGAATCTCGTCTCTCTGCCGCTGCAGCCGCCGCTGCCGTTGTTAACCTCCGCCCCCACCGCCACTCCGACCCTCACTGGTCCGCCATTAAAGCCGCTACTACTCTCTCTTCCGACGGCCATCTTCACCTCCGCCACCTCAAACTCATCCGCCATCTCGGTACCGGCAACCTCGGCCGTGTTTTCTTGTGCCATTTGAGAGACAACGATCACGCCAGTTTCGCTTTGAAGGTGGTGGATAAGGAGGCTCTTAGTAATAAGAAGCTTTTGCAGGTCCAAACGGAAGCCGAGATTCTCGCTTCCTTGGACCACCCTTTTCTCCCAACTCTCTACGCGCGTCTCGACGTCTCTCACTACACGTGCCTCCTTATCGACTATTGTCCTGCCGGTGACCTCCATTCACTCCTCCGCAAACAGCCTGGTAACCGTCTTTCTGTCGCGGCGGCGAGATTCTTTGCCGCCGAGATCCTGGTGGCGCTCGAGTACCTTCACGCGCTTGGGATTGTGTACCGCGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGCCACGTCATGCTCTCGGATTTCGACTTGTGTTTTAAATCCGACGTGGTACCCACTTTTCATACGTGGACTCGCCCGGGACCACAGCCTGCTGCCTGCTGCTTTGGATGGAAGACGGCGGAGGAGGAAGAGGAGATTGTCGGGGAGTTTGTGGCGGAGCCGACAGCGGCGTTTTCGAAGTCGTGCGTAGGGACTCATGAGTACTTGGCGCCCGAGTTAGTGACCGGTGGTGGCCACGGAAACGGCGTCGACTGGTGGGCGTTTGGGGTGTTCGTTTACGAGCTTCTGCACGGGACGACGCCGTTTAAAGGAGTGAATAAGGAGGGTACGTTAAGGAACATTGCGTCATCGGAGGGGGTGAAGTTCCGGGCGGAGGCAGCGGAGGAAGAGGAAGGGATGGCGGACGCGAGAGATCTAATAGAGAGGCTGCTAGTGAAAGATCCGGCGAGGCGGTTGGGTTCCGGGAAAGGGGCGACGGAGATCAAACGGCATCCGTTCTTCGACGGGATAAAATGGCCGTTGATCAGGACATATCGGGCGCCGGAGGTGTATGGGCTGATGAGAAAAGCCAGATCCCACGTGAGCCACGTGACAGGCGTGACCCACCGCATGCGACGGCGGGGCTGGTGGAACTGGAGGAAGCTCATTAGCAACCGTTTAATTAAAAATGGAAGTTCAAGTAAATCTCATACCAATACCAATTATTATAGTTATAGTTCAAAAAATAAGACGGGTTGA 1425 55.58 MEDDYSIFPPDSDLDFSFTSTATDRTFTTSSSARTSLARSSLTLSFNESRLSAAAAAAAVVNLRPHRHSDPHWSAIKAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDKEALSNKKLLQVQTEAEILASLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGNRLSVAAARFFAAEILVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTRPGPQPAACCFGWKTAEEEEEIVGEFVAEPTAAFSKSCVGTHEYLAPELVTGGGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIASSEGVKFRAEAAEEEEGMADARDLIERLLVKDPARRLGSGKGATEIKRHPFFDGIKWPLIRTYRAPEVYGLMRKARSHVSHVTGVTHRMRRRGWWNWRKLISNRLIKNGSSSKSHTNTNYYSYSSKNKTG 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29299355 29300779 - CrPI670011_07g014270.1 Cre07g1427 504008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1427 474 SUPERFAMILY Protein kinase-like (PK-like) 69 425 IPR011009 -
Cre07g1427 474 CDD STKc_phototropin_like 91 412 - -
Cre07g1427 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1427 474 FunFam Serine/threonine-protein kinase OXI1 286 414 - -
Cre07g1427 474 Gene3D Phosphorylase Kinase; domain 1 92 176 - -
Cre07g1427 474 FunFam Serine/threonine-protein kinase OXI1 177 244 - -
Cre07g1427 474 SMART serkin_6 93 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1427 474 MobiDBLite consensus disorder prediction 452 474 - -
Cre07g1427 474 Gene3D Transferase(Phosphotransferase) domain 1 288 409 - -
Cre07g1427 474 PANTHER FLIPPASE KINASE 1-RELATED 36 415 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre07g1427 474 Gene3D Transferase(Phosphotransferase) domain 1 177 244 - -
Cre07g1427 474 ProSiteProfiles Protein kinase domain profile. 93 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1427 474 Pfam Protein kinase domain 288 396 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1427 474 Pfam Protein kinase domain 95 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1427 Cre-Chr7:29299355 Cre11g0773 Cre-Chr11:4933124 1.70E-92 dispersed
Cre07g1427 Cre-Chr7:29299355 Cre02g2508 Cre-Chr2:38353164 2.80E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64274 PF00069 Pkinase 5.30E-54 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1427 - - - 0.0