Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1434 ATGAACATGAAATGGACCAACGTCATCGATTTGTTGCTACGAATTCTCTCAGCTCACCTTCTAAGATTTCAGTATTTAAAGGTAAAACCCCCAACAAGAAGTTTGGTCGATGAAGAAGAATTTTCGAGCATGCAAAATGTTAAATTTTACACATACAAAGAGCTAAAAGTTGCAACCGGAGATTTCAGCTTGGCGAATAAAATAGGGGAGGGAGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAAAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCGGCTGAGTCAAGACAAGGATTGAGGGAATTCTTGACAGAAATTAATGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGAATTCTTGTCTACAATTACCTTGAGAACAATAGCCTCGCCCAAACTCTTCTTGGGCGAGGTTACAGTAGCATCCAGTTTAATTGGCAAACAAGGTCTAAGATTTGCATTGGAATTGCACGTGGCCTTGCCTTCCTTCACGAGGATGTACAGCCACATATCATTCATAGAGATATCAAAGCGAGCAACATTCTTCTTGATCATGACCTCTCTCCTAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTAGCTCCAGAATATGCGATAAGAGGGCAGGTGACAAGAAAATCAGATATTTACAGTTTTGGAGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAACACAAATACACAATTACCAATTGGAGAACAATATCTTCTTGAAAGGACATGGAATCTTTATGAGCGAGGAGAGCTCGTTCTGCTAGTTGATTTGTCCTTAAATGGCGACTTCGATGCAGAGGAGGCTTGTAAATATCTAAAGATTGGTCTACTTTGCACACAAGACAGTCCAAAACTCCGTCCATCCATGTCGACTGTGGTAAAGATGCTAACAGGAGAGATGAGTATTGAAGACAGAAAGATAACGAAACCGGGGCTGATTTCGGACTTCATGGATCTAAAAGTAAAGAATCCAGAGGAAAAGAAAGGGAATAGAGAGGGGGTGTCTTCTGATAGTCTATCCTCTGGATCAAACATCCTTGGAAATTCAACAATGTCATCTGAAGCCTCAACTGTTACATCTACAACCTTCACTGCACAATATGACAGGAATACTTTCTCATCTGTAATGTCGGCCATGGGGGTTGAGGCCTTGACCCATAGGAAGTGGGCTGCCGCAAAAGGAAAGAGGCCTATCTCAATCTCAGCCTCAAAGGCCGAGGCGTGCACCTTGAGCCACTCAACATAA 1356 42.18 MNMKWTNVIDLLLRILSAHLLRFQYLKVKPPTRSLVDEEEFSSMQNVKFYTYKELKVATGDFSLANKIGEGGFGSVYKGKLKDGKIAAIKVLSAESRQGLREFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFNWQTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDHDLSPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNTQLPIGEQYLLERTWNLYERGELVLLVDLSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEMSIEDRKITKPGLISDFMDLKVKNPEEKKGNREGVSSDSLSSGSNILGNSTMSSEASTVTSTTFTAQYDRNTFSSVMSAMGVEALTHRKWAAAKGKRPISISASKAEACTLSHST 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29393672 29402996 - CrPI670011_07g014340.1 Cre07g1434 504015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1434 451 FunFam cold-responsive protein kinase 1 138 349 - -
Cre07g1434 451 Gene3D Transferase(Phosphotransferase) domain 1 138 347 - -
Cre07g1434 451 CDD STKc_IRAK 68 335 - -
Cre07g1434 451 SMART serkin_6 62 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1434 451 Gene3D Phosphorylase Kinase; domain 1 33 137 - -
Cre07g1434 451 Pfam Protein kinase domain 64 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1434 451 ProSiteProfiles Protein kinase domain profile. 62 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1434 451 SUPERFAMILY Protein kinase-like (PK-like) 42 333 IPR011009 -
Cre07g1434 451 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524(InterPro)
Cre07g1434 451 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 43 369 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cre07g1434 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1434 451 FunFam cold-responsive protein kinase 1 33 137 - -
Cre07g1434 451 MobiDBLite consensus disorder prediction 371 390 - -
Cre07g1434 451 MobiDBLite consensus disorder prediction 360 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0986 Cre-Chr4:28454958 Cre07g1434 Cre-Chr7:29393672 4.30E-101 dispersed
Cre07g1434 Cre-Chr7:29393672 Cre10g2306 Cre-Chr10:37307713 1.40E-91 dispersed
Cre07g1434 Cre-Chr7:29393672 Cre07g1399 Cre-Chr7:28896595 4.90E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64275 PF00069 Pkinase 4.40E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1434 - - - 0.0