Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre07g1460 | ATGAGTTCTTCAATGAAGGGAAACAATAGGATGTCCGTTGCCATGGAGAGAACGGGACAATGGATTTTCTCTCAAGACATTCCGACTGATGTCGTGGTTGCGGTCGAGGAAGCACATTTTCCTCTTCACAAGTTCATGTTGGTAGCAAAGAGCAACTACATAAGGAAATTGATAATGGAATCGACGGAGGCAGATCTAACAAGGATCGATCTGACGGACATTCCCGGCGGTGCTGAGATTTTCGAGAAGGCAGCGAAATTTTGCTACGGTGTGAACTTCGAGATCACGGTGCACAACGTGGCGGCGCTCCGATGTGCTGCAGAGTATCTGCAAATGACCGACAATTACTCCGACAACAACCTCGTCGGTCGGACCGAAGATTTCCTCTCTCAGGTGGCACTCTCCAGCCTTTCTGGAGCCATAGTTGTTCTTAAATCTTCCCACCATCTTCTTCCTATGGCTGAAGACCTTTACATTGTCCATAGATGTGTGGATGTTATCAGTTCCAAGGCTTGCAACGAGGCGAACTTCCCAAGTCGATCACCTCCAAATTGGTGGACAGAGGAGCTAACCATAATCGACATCCAATTCTTCGCCAAAATCATAACTGCAATGAAATCTCGTGGCGCCAAAGCCTCAACTCTCTCCGCCGCTCTAATCACGTACGCCGAGAGATCTCTCCGCGATCTACTCCGCGACCACTCCGGCACCGCCCCCATCGACGATTCCGACACCAGCAGAACCAAACAACGAGAGCTCCTGGAATCAATAGTTGGTCTCTTACCTCCGGACAAAGCCGCATTCCCAATTAACTTCCTGTGCTGCCTACTCCGATCTGCGATTTACCTGAAAACAAGCATGGGGTGCAAGAACGAGGTGGAGAAGAGGATTTCGATGGTGCTGGAACATTTGAGCGTAGATGATTTGCTGGCAATGTCGTTCACGTACGACGGGGAGAGGCTGGTGGAGTTGGAAAGTATAAGGAGGATAATATTGGGATTTGTGGAAAGGGAGAAGAGCGTGGCGGTGTTTAATGCCGGAGATCTGAAAGAGGTTTGCTCTGTTTCGTTGCAAAGAGTGGGGAAGACGGTGGATGCGTATTTGGGGGAGATTGCTACTTATTCCCAACTCAGCATATCCAAATTTAATGGGATTGCTAATATAATACCCAAATTTGCACGCAAGGTTGATGATGATCTTTATAGAGCTATTGATATTTATCTCAAGGCACACCCAAATCTGGATGAGATCGAACGGGAGAAGGTATGCAGTGTGATGGAGCCGTTGAAGCTATCGTACGAAGCGCGAGTACATGCTTCGCAGAACAAGCGATTGCCGGTGCAAATAGTCCTTCATGCACTCTACTACGATCAGCTGAAGCTAAGAAGCGGCACGGCGGAGGAGCGGAGCGCCCACGACGCGGCCATGACAAGGAATCAAGCACAGGCAGATGTGTCATTAGTGAAAGAGAATGAGGCATTGAGGTGTGAGTTAATGAAGATGAAGCTTTACATATCTGACATGCACAAGAATTCTCAAGGAACATCTTCCATGAAAGCACCACCTTCTAGAACCAAGCCCACCTTCTTCTCCACAGTCTCTAAAACACTTGGCAAATTAAATCCCTTCCGTCATGGTTCTAAAGACACTTCTAATATCGTTGACGCTGTCGACATTACGAAGCCCAGGAGGAGAAGGGTCACTGCTGAGTTTGTTTATTCAAGATTGGTGTGTCTATTGGGAATGGCAATGGCCGCCACTTCCCTTTCGAACCTGCCTTCTGCTCTCTTCCATGGAAATCTGCAGAGAAATGAATTTGGGTCTGTGGGTATGCGGAGACAACCCAACAAGTATCTCAAATCCAATCTTACAGCTCCGGTTGTGAGATGCCAATCAACTGAAGTTGATGGACCGAAAACAAAAAGAAATCTGCTCGACAATGCCAGCAATCTTCTTACCAATTTGTTAAGTGGTGGAAATTTGGGATCTATGCCGATAGCTGAAGGTGCAGTCTCTGATTTGTTCGGCCGCCCACTCTTCTTTGCACTGTATGATTGGTTCTTAGAGCATGGATCTGTTTATAAACTTGCCTTTGGACCAAAAGCCTTTGTTGTTGTATCAGATCCTATTGTGGCAAGATATATTCTTCGTGAAAACGCATTTGGTTATGACAAGGGAGTGCTTGCTGATATTCTAGAACCGATAATGGGTAAAGGACTAATACCAGCTGATCTTGACACTTGGAAGCAGAGGAGAAGAGTTATAGCTCCTGGATTCCATGCCTTATACTTGGAAGCTATGACCAAAGTCTTCACTGATTGTTCAGAACGATCAATACTGAAATTGGAAAAGCTTCTAGGAGAAGGTGAACTTCAGGAGGATAAAACCATTGAGTTGGATATGGAAGCAGAGTTTTCGAGTTTGGCTCTTGATATCATTGGACTTGGTGTTTTCAACTATGATTTTGGTTCTGTAACCAAAGAATCCCCAGTGATTAAGGCTGTATATGGAACCCTTTTTGAAGCAGAGCATAGATCAACTTTCTATATCCCATACTGGAAAGTACCTTTGGCAAGGTGGATAGTCCCAAGGCAGCGTAAATTCCATAGTGACCTTAAGGTTATTAATGACTGTCTTGATGGACTAATACGAAATGCAAGAGAAACCCGAGAGGAAGCCGATGTTGAGAAATTGCAGCAAAGGGACTATTTAAATCTCAAGGATGCGAGTCTTTTGCGTTTCTTAGTTGATATGCGGGGAGTTGATGTCGATGATCGGCAGCTTCGGGACGATCTGATGACAATGCTTATTGCCGGGCATGAAACAACTGCTGCTGTGCTTACATGGGCTGTTTTTTTGCTTGCACAAAACCCTTCAAAAATGAAAAAAGCTCAGGCAGAGATCGATTTGGTTCTTGGCAAGGGAAGGCCAACTTTTGAATTACTTAAAGGATTGAAGTACATCAGACTTATCGTCGCAGAGACTCTTCGTTTGTTTCCTCAGCCACCATTGCTAATAAGACGAGCTCTCAAACCGGATACATTGCCAGGAGGATACAATGGTGACAAAAATGGATATGCAATACCTGCAGGAACTGACATCTTCATCTCTGTTTACAATCTCCACAGATCTCCATACTTCTGGGAAAACCCTCAAGAATTTGAACCAGAGAGATTTCAAGTAAAGAAGGCAAGCGAGGGAATTGAAGGATGGGATGGTTTTGACCCATCAAGAAGCCCTGGAGCTCTATACCCAAACGAGATTGTATCAGACTTTTCCTTCTTACCATTTGGTGGAGGACCTAGAAAATGTGTGGGGGATCAATTTGCTCTAATGGAGTCAACTATAGCACTGGCCATGTTACTGCAGAAGTTTGATGTGGAACTAAGAGGAAGCCCAGAATCTGTGGAACTTGTTACTGGGGCCACTATACATACCAAAGGTGGCTTGTGGTGCAAACTGAAAAGAAGATCACAAGACCAACTACAAGGTTCTCAGAATCGCTTGCAAAATTTCATGGTAGTAAGAGAGCCTCAAGAAGAAATATACTTGTTAAAAGGACTCGTGGCAGACCTGGGATTATTACACCAACTTGTCTGA | 3600 | 45.22 | MSSSMKGNNRMSVAMERTGQWIFSQDIPTDVVVAVEEAHFPLHKFMLVAKSNYIRKLIMESTEADLTRIDLTDIPGGAEIFEKAAKFCYGVNFEITVHNVAALRCAAEYLQMTDNYSDNNLVGRTEDFLSQVALSSLSGAIVVLKSSHHLLPMAEDLYIVHRCVDVISSKACNEANFPSRSPPNWWTEELTIIDIQFFAKIITAMKSRGAKASTLSAALITYAERSLRDLLRDHSGTAPIDDSDTSRTKQRELLESIVGLLPPDKAAFPINFLCCLLRSAIYLKTSMGCKNEVEKRISMVLEHLSVDDLLAMSFTYDGERLVELESIRRIILGFVEREKSVAVFNAGDLKEVCSVSLQRVGKTVDAYLGEIATYSQLSISKFNGIANIIPKFARKVDDDLYRAIDIYLKAHPNLDEIEREKVCSVMEPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGTAEERSAHDAAMTRNQAQADVSLVKENEALRCELMKMKLYISDMHKNSQGTSSMKAPPSRTKPTFFSTVSKTLGKLNPFRHGSKDTSNIVDAVDITKPRRRRVTAEFVYSRLVCLLGMAMAATSLSNLPSALFHGNLQRNEFGSVGMRRQPNKYLKSNLTAPVVRCQSTEVDGPKTKRNLLDNASNLLTNLLSGGNLGSMPIAEGAVSDLFGRPLFFALYDWFLEHGSVYKLAFGPKAFVVVSDPIVARYILRENAFGYDKGVLADILEPIMGKGLIPADLDTWKQRRRVIAPGFHALYLEAMTKVFTDCSERSILKLEKLLGEGELQEDKTIELDMEAEFSSLALDIIGLGVFNYDFGSVTKESPVIKAVYGTLFEAEHRSTFYIPYWKVPLARWIVPRQRKFHSDLKVINDCLDGLIRNARETREEADVEKLQQRDYLNLKDASLLRFLVDMRGVDVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPSKMKKAQAEIDLVLGKGRPTFELLKGLKYIRLIVAETLRLFPQPPLLIRRALKPDTLPGGYNGDKNGYAIPAGTDIFISVYNLHRSPYFWENPQEFEPERFQVKKASEGIEGWDGFDPSRSPGALYPNEIVSDFSFLPFGGGPRKCVGDQFALMESTIALAMLLQKFDVELRGSPESVELVTGATIHTKGGLWCKLKRRSQDQLQGSQNRLQNFMVVREPQEEIYLLKGLVADLGLLHQLV | 1199 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 29703950 | 29717213 | - | CrPI670011_07g014600.1 | Cre07g1460 | 504041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre07g1460 | 1199 | ProSiteProfiles | NPH3 domain profile. | 184 | 460 | IPR027356 | - | |
| Cre07g1460 | 1199 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 1097 | 1106 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cre07g1460 | 1199 | ProSiteProfiles | BTB domain profile. | 29 | 97 | IPR000210 | GO:0005515(InterPro) | |
| Cre07g1460 | 1199 | SMART | BTB_4 | 29 | 133 | IPR000210 | GO:0005515(InterPro) | |
| Cre07g1460 | 1199 | Gene3D | Cytochrome P450 | 663 | 1175 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | FunFam | BTB/POZ domain-containing protein At1g03010 | 5 | 125 | - | - | |
| Cre07g1460 | 1199 | PRINTS | P450 superfamily signature | 1095 | 1104 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | PRINTS | P450 superfamily signature | 990 | 1001 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | PRINTS | P450 superfamily signature | 938 | 955 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | PRINTS | P450 superfamily signature | 1104 | 1115 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | SUPERFAMILY | Cytochrome P450 | 675 | 1157 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | Pfam | Cytochrome P450 | 687 | 1147 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | Pfam | NPH3 family | 184 | 435 | IPR027356 | - | |
| Cre07g1460 | 1199 | CDD | CYP97 | 681 | 1151 | - | - | |
| Cre07g1460 | 1199 | SUPERFAMILY | POZ domain | 14 | 128 | IPR011333 | - | |
| Cre07g1460 | 1199 | PRINTS | E-class P450 group I signature | 947 | 973 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | PRINTS | E-class P450 group I signature | 1104 | 1127 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | PRINTS | E-class P450 group I signature | 687 | 706 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | PRINTS | E-class P450 group I signature | 927 | 944 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | PRINTS | E-class P450 group I signature | 1094 | 1104 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre07g1460 | 1199 | Gene3D | Potassium Channel Kv1.1; Chain A | 7 | 133 | IPR011333 | - | |
| Cre07g1460 | 1199 | PANTHER | OS12G0117600 PROTEIN | 26 | 522 | IPR043454 | - | |
| Cre07g1460 | 1199 | Pfam | BTB/POZ domain | 24 | 114 | IPR000210 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1049 | Cre-Chr4:29135078 | Cre07g1460 | Cre-Chr7:29703950 | 8.10E-108 | dispersed | |
| Cre04g1379 | Cre-Chr4:32614742 | Cre07g1460 | Cre-Chr7:29703950 | 1.00E-13 | dispersed | |
| Cre07g0552 | Cre-Chr7:3357833 | Cre07g1460 | Cre-Chr7:29703950 | 5.30E-102 | dispersed | |
| Cre07g1460 | Cre-Chr7:29703950 | Cre10g0989 | Cre-Chr10:14799156 | 3.80E-120 | dispersed | |
| Cre07g1460 | Cre-Chr7:29703950 | Cre02g1552 | Cre-Chr2:27975868 | 1.10E-124 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre07g1460 | K24543 | - | csv:101210292 | 1060.83 |