Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1462 ATGAATAATATTATCAAGTATAATAATCTCCTCACCAATCTTGCTCTATCTTCTCTTCTCCCTCTCCTTGCTTTCCTCTTCATGATCAATCCTACCCCTCCTTTCCTTTCCAATCTCGTCGTCTTTCGTGACTCCGTCGATTGTCGTCACCACCATCATCACCATCATAAAAACGCAACTGACGAACAGGACCAAACAACGATAACTTCCATTTGTGATAACTTTCCGACCACCCTCCTCCCACCAGAAACCACCAACACTTCTGTTTTTTGTGTTGACCGAAACGGTTGTTGCAACTTCACAACAGTTCAAGCAGCAGTCGATGCTGTGCCAAACTTGAGCTTCAAACGAAACCTAATTTGGATCAACGCTGGAATTTACTACGAGAAGGTGATGGTTCCAAAATCTAAACCAAACGTGACATTTCAAGGACAAGGCTATACAACCACCGCCATTGTTTGGAATGACACTGCCAATTCTTCCCATGGCACCTTTTATAGTGGCTCTGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGACATCGGAGCACAGGCGGTGGCGATTAGAATCGGCGGAGACCAGGCGGCATTTTGGAGCTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGACGACCGTGGCCGCCATTACTTCAAAGATTGCTACATCCAAGGCTCCATCGATTTCATCTTTGGAAACGGAAGATCCTTCTACGAGAGTTGCCAGTTGATTTCGATGGCGAATCCGGTCCCGCAAGGATCGAAGTTTGTGAACGGAGCGGTGACGGCGCACGGCAGAGCCTCCGCTGACGAGAACTCTGGATTTGTTTTTGTTAATTGCAGCATCGGCGGGACCGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTTGCTAACACCGTCATGACGGATATTATTGCGGCGGAGGGGTGGAATGACTTTAATGACCCTGCAAGGGACCAGACAATCTTCTATGGAGAGTACAACTGCAGTGGAGCAGGAGCCAATATGAGCTCAAGGGCTCCCTTTGTTCAAAGGCTTAATGATACTCAAGTTTCCTCTTTCCTCAACTTATCCTTCATTGATGCTGACCAATGGCTCCAACCCTACTCATTGTTTTAA 1182 48.39 MNNIIKYNNLLTNLALSSLLPLLAFLFMINPTPPFLSNLVVFRDSVDCRHHHHHHHKNATDEQDQTTITSICDNFPTTLLPPETTNTSVFCVDRNGCCNFTTVQAAVDAVPNLSFKRNLIWINAGIYYEKVMVPKSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGDIGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLISMANPVPQGSKFVNGAVTAHGRASADENSGFVFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAAEGWNDFNDPARDQTIFYGEYNCSGAGANMSSRAPFVQRLNDTQVSSFLNLSFIDADQWLQPYSLF 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29746772 29751381 + CrPI670011_07g014620.1 Cre07g1462 504043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1462 393 FunFam Pectinesterase 84 392 - -
Cre07g1462 393 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Cre07g1462 393 SUPERFAMILY Pectin lyase-like 88 390 IPR011050 -
Cre07g1462 393 Gene3D - 88 392 IPR012334 -
Cre07g1462 393 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 67 388 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cre07g1462 393 Pfam Pectinesterase 92 383 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1462 Cre-Chr7:29746772 Cre09g2114 Cre-Chr9:40129806 2.40E-71 dispersed
Cre07g1462 Cre-Chr7:29746772 Cre08g1439 Cre-Chr8:27342821 4.20E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1462 - - - 0.0