Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g1478 | ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGAGACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTGTGCTTGATGGATGGGATGAAGCAGGTGTTGCTGTTACAACCCCCAGAGCTGGAAGTACCTCTGCTCGGGTATCTTCCCTGCAGTCATTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCTGTGTCTTCGACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTCATTTATCAGACAGACCTGCGAGAGGCGTGGGTGGTCAAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGGTCTGCTAATTTTAGGTTAAATACACAACCTTCTGGTCCTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCATGACATGGCTGGTTCTTGTAATAATTCTAGAGTAGGGCCAGATGGAAACCTTTCCCTTCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGACGGGCTGGATCTAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCATCGTTACCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACCCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTGCTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTCGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCGGATCTGATGCGTTATCAGATGATGTCAATTTGTGGTGCCTTTTTCTAAGAATCAACTTGCTAGAGTGTTGTAATGGGAGTGGATTCAATCAGTTGAGAAAATTGTTTTCACAGAGAAATATATTAGCTTTTCTCTTGCTCTTGTCCAAGGATGTGAATAAGTATCGGAAAGGGAGAGATTTGTTTGTCTACTAG | 1929 | 44.53 | MGSSGSKSSSSSLPAAETLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVVLDGWDEAGVAVTTPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPHLSDRPARGVGGQDETQQGRDLLPASLASETHTQCYGDRSANFRLNTQPSGPSDNLQDNQSVSSTHDMAGSCNNSRVGPDGNLSLPRTLPENESSEIRQSDRRAGSREPVERNFRFSRTLSVGRLRDRVLRRSSLPDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSGSDALSDDVNLWCLFLRINLLECCNGSGFNQLRKLFSQRNILAFLLLLSKDVNKYRKGRDLFVY | 642 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 30011616 | 30016877 | - | CrPI670011_07g014780.1 | Cre07g1478 | 504059 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 318 | 372 | - | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 277 | 293 | - | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 161 | 202 | - | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 345 | 372 | - | - | |
Cre07g1478 | 642 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 493 | 578 | IPR013083 | - | |
Cre07g1478 | 642 | Pfam | Ring finger domain | 530 | 573 | IPR001841 | - | |
Cre07g1478 | 642 | ProSiteProfiles | Zinc finger RING-type profile. | 531 | 573 | IPR001841 | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 49 | 65 | - | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 224 | 293 | - | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 224 | 276 | - | - | |
Cre07g1478 | 642 | FunFam | Putative RING zinc finger domain superfamily protein | 499 | 578 | - | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 161 | 179 | - | - | |
Cre07g1478 | 642 | SMART | ring_2 | 531 | 572 | IPR001841 | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 330 | 344 | - | - | |
Cre07g1478 | 642 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cre07g1478 | 642 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 580 | - | - | |
Cre07g1478 | 642 | SUPERFAMILY | RING/U-box | 509 | 579 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g2066 | Cre-Chr6:28437014 | Cre07g1478 | Cre-Chr7:30011616 | 2.10E-41 | dispersed | |
Cre07g1478 | Cre-Chr7:30011616 | Cre09g1125 | Cre-Chr9:12010619 | 2.90E-10 | dispersed | |
Cre07g1478 | Cre-Chr7:30011616 | Cre05g0389 | Cre-Chr5:3546671 | 3.80E-10 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g1478 | - | - | - | 0.0 |