Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1478 ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGAGACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTGTGCTTGATGGATGGGATGAAGCAGGTGTTGCTGTTACAACCCCCAGAGCTGGAAGTACCTCTGCTCGGGTATCTTCCCTGCAGTCATTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCTGTGTCTTCGACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTCATTTATCAGACAGACCTGCGAGAGGCGTGGGTGGTCAAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGGTCTGCTAATTTTAGGTTAAATACACAACCTTCTGGTCCTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCATGACATGGCTGGTTCTTGTAATAATTCTAGAGTAGGGCCAGATGGAAACCTTTCCCTTCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGACGGGCTGGATCTAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCATCGTTACCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACCCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTGCTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTCGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCGGATCTGATGCGTTATCAGATGATGTCAATTTGTGGTGCCTTTTTCTAAGAATCAACTTGCTAGAGTGTTGTAATGGGAGTGGATTCAATCAGTTGAGAAAATTGTTTTCACAGAGAAATATATTAGCTTTTCTCTTGCTCTTGTCCAAGGATGTGAATAAGTATCGGAAAGGGAGAGATTTGTTTGTCTACTAG 1929 44.53 MGSSGSKSSSSSLPAAETLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVVLDGWDEAGVAVTTPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPHLSDRPARGVGGQDETQQGRDLLPASLASETHTQCYGDRSANFRLNTQPSGPSDNLQDNQSVSSTHDMAGSCNNSRVGPDGNLSLPRTLPENESSEIRQSDRRAGSREPVERNFRFSRTLSVGRLRDRVLRRSSLPDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSGSDALSDDVNLWCLFLRINLLECCNGSGFNQLRKLFSQRNILAFLLLLSKDVNKYRKGRDLFVY 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30011616 30016877 - CrPI670011_07g014780.1 Cre07g1478 504059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1478 642 MobiDBLite consensus disorder prediction 318 372 - -
Cre07g1478 642 MobiDBLite consensus disorder prediction 277 293 - -
Cre07g1478 642 MobiDBLite consensus disorder prediction 161 202 - -
Cre07g1478 642 MobiDBLite consensus disorder prediction 345 372 - -
Cre07g1478 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 578 IPR013083 -
Cre07g1478 642 Pfam Ring finger domain 530 573 IPR001841 -
Cre07g1478 642 ProSiteProfiles Zinc finger RING-type profile. 531 573 IPR001841 -
Cre07g1478 642 MobiDBLite consensus disorder prediction 49 65 - -
Cre07g1478 642 MobiDBLite consensus disorder prediction 1 79 - -
Cre07g1478 642 MobiDBLite consensus disorder prediction 224 293 - -
Cre07g1478 642 MobiDBLite consensus disorder prediction 224 276 - -
Cre07g1478 642 FunFam Putative RING zinc finger domain superfamily protein 499 578 - -
Cre07g1478 642 MobiDBLite consensus disorder prediction 161 179 - -
Cre07g1478 642 SMART ring_2 531 572 IPR001841 -
Cre07g1478 642 MobiDBLite consensus disorder prediction 330 344 - -
Cre07g1478 642 MobiDBLite consensus disorder prediction 1 18 - -
Cre07g1478 642 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 580 - -
Cre07g1478 642 SUPERFAMILY RING/U-box 509 579 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2066 Cre-Chr6:28437014 Cre07g1478 Cre-Chr7:30011616 2.10E-41 dispersed
Cre07g1478 Cre-Chr7:30011616 Cre09g1125 Cre-Chr9:12010619 2.90E-10 dispersed
Cre07g1478 Cre-Chr7:30011616 Cre05g0389 Cre-Chr5:3546671 3.80E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1478 - - - 0.0