Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1493 ATGGGCATCTGTCTGGTCAAATGTTCTGGCTTGATGGTTCTTCACGTTCTACTTCTTTGTATGACAATGAATAAAAGCACTGGCCTCACCCCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTCCAGTGGAGACCTGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGTGATCCAAAAACGAAGAGAGTAATCTCATTGAAGCTTGCAAGTCACAAACTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTGACTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGTGGAGCGATTCCCTATGAGCTGGGAAACCTTTCAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCCCTTAGTGGAAATATCCCAACGTCCCTTGGGAATTTGGATAAGCTGGCTATTCTCAATGTTTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTCGTTGGAAATCGTGGTTTGTGTGGGAAACAAGTTAGCGTCATCTGCAAAGACGATAATACTGGATCTGGAACAAATCCTGAGTACCCAAGCTCAGCCCAAAATCAAATGAGGAGGAAGTATTCTGGCCGGCTGCTCATAAGTGCATCAGCAACAGTGGGTGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGTGAAGGATGTTGGTGGAGGCGCATCCATTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATCGGTTCTGGGGGTTTTGGAACGGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTATCTATCTGGGGGAAGCCTTGACGAGGCCCTTCATGAAAGATCTGAGCAATTGGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCTTATTTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTGCTCGATGGCAATCTGGATGCTCGAGTTTCTGACTTCGGACTTGCCAAGCTTCTGGATGACGATAAATCTCATATTACAACCATTGTTGCTGGAACATTTGGTTATTTGGCCCCCGAATATATGCAAAGTGGTAGGGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTTCTGGTACTTGAAGTGCTGAGTGGAAAACGACCTACGGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGTTAAATTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATCCACAATGTGAAGGAGTGCAGTCGGAAACTCTTGACGCATTGCTAAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGACCGACTATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACTCCATGCCCAAGTGACTTCGATGATTCCAATTCTGATTAA 1788 42.9 MGICLVKCSGLMVLHVLLLCMTMNKSTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLASHKLSGFIAPELGKLDQLKTLTLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGAIPYELGNLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVSVICKDDNTGSGTNPEYPSSAQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLVKDVGGGASIVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30152885 30164148 + CrPI670011_07g014930.1 Cre07g1493 504074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1493 595 Gene3D Phosphorylase Kinase; domain 1 287 385 - -
Cre07g1493 595 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Cre07g1493 595 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 284 385 - -
Cre07g1493 595 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1493 595 SMART serkin_6 310 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1493 595 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Cre07g1493 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1493 595 SUPERFAMILY L domain-like 30 193 - -
Cre07g1493 595 Gene3D Ribonuclease Inhibitor 30 216 IPR032675 -
Cre07g1493 595 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 386 588 - -
Cre07g1493 595 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cre07g1493 595 Gene3D Transferase(Phosphotransferase) domain 1 386 584 - -
Cre07g1493 595 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 161 579 IPR050647 -
Cre07g1493 595 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1493 595 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524(InterPro)
Cre07g1493 595 SUPERFAMILY Protein kinase-like (PK-like) 293 577 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1322 Cre-Chr1:26428844 Cre07g1493 Cre-Chr7:30152885 3.60E-131 dispersed
Cre06g2506 Cre-Chr6:32765174 Cre07g1493 Cre-Chr7:30152885 3.40E-122 dispersed
Cre07g1493 Cre-Chr7:30152885 Cre11g2123 Cre-Chr11:32932392 1.60E-82 dispersed
Cre11g1910 Cre-Chr11:30867215 Cre07g1493 Cre-Chr7:30152885 5.00E-54 dispersed
Cre07g1493 Cre-Chr7:30152885 Cre11g2036 Cre-Chr11:32138040 1.90E-226 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64277 PF00069 Pkinase 2.50E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1493 - - - 0.0