Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g1510 | ATGGCTAATCGGGGAGGAGGGTCATTTTTACCCTCAAATATTCCGCCTCAAGGTTGGGCAGGAGATGAACTTTACGCTGAGCTATGGAGAGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTTTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTATTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGACAGTGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACGAGTCTTGAACCTTCACCCCCAGAGTGTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTCCGGAAACATGCCACCGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTTCGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGACGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCCAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAGAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATAGAAGCGATGAACTATAAGTTCTCAGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGACTGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTCGTGGCTCCTACGTCCCCAAGCATTCCGCACTCTATTTCCATAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCTAGATTCTGATAATTCAACTGTAACAACTCTAAGACATCCAGGATCATCTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACATGGCATTACAAGCAAACGGATGTTAGCAGCAATGGGAATTCTGTATCAAGGAGTCCGATGGAGGGCTCTTGGTTAACTTCTCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGAATTGACAGATGACCGTAAGAGCAGTTCTGTTTGGTCAACGGTCTTTCCAGGAGTGCTGGCATCAAACTCGACATGTCCAACTCCACGCCCGTCAAATCCAAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAAGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGAGCTCATCAATCATTCTAAGAGCCCAGTTCCTCCTGAAAGGGTGCCCGATCAACCAATTAGCACACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCCTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTCGGACGTGCGGTGGACCTTACCACATTGGAGGGGTATGGCCAACTCATTGATGAACTAGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGATGAAGGAGATACGATGCTCATGGGCGACTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCGGGTAGCAAACTTGCGATGTCTACAATCGAATGTGACGGGACTGTAATAACCTCGGAGTCAGCCGACAGCTGA | 2094 | 46.7 | MANRGGGSFLPSNIPPQGWAGDELYAELWRVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLEPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSDWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISIKNKRPRPPLEILDSDNSTVTTLRHPGSSQSHDDRTQLSVAAAEIKRFENHATWHYKQTDVSSNGNSVSRSPMEGSWLTSPNGSVSQHRLQELTDDRKSSSVWSTVFPGVLASNSTCPTPRPSNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPVPPERVPDQPISTPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGTVITSESADS | 697 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 30378920 | 30382530 | - | CrPI670011_07g015100.1 | Cre07g1510 | 504091 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g1510 | 697 | Pfam | AUX/IAA family | 576 | 622 | IPR033389 | - | |
Cre07g1510 | 697 | Pfam | AUX/IAA family | 633 | 669 | IPR033389 | - | |
Cre07g1510 | 697 | MobiDBLite | consensus disorder prediction | 365 | 384 | - | - | |
Cre07g1510 | 697 | MobiDBLite | consensus disorder prediction | 574 | 590 | - | - | |
Cre07g1510 | 697 | FunFam | Auxin response factor | 127 | 231 | - | - | |
Cre07g1510 | 697 | Pfam | B3 DNA binding domain | 129 | 229 | IPR003340 | GO:0003677(InterPro) | |
Cre07g1510 | 697 | Pfam | Auxin response factor | 255 | 333 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cre07g1510 | 697 | Gene3D | - | 126 | 230 | IPR015300 | - | |
Cre07g1510 | 697 | CDD | B3_DNA | 127 | 229 | IPR003340 | GO:0003677(InterPro) | |
Cre07g1510 | 697 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 23 | 673 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cre07g1510 | 697 | SUPERFAMILY | DNA-binding pseudobarrel domain | 116 | 258 | IPR015300 | - | |
Cre07g1510 | 697 | SUPERFAMILY | CAD & PB1 domains | 580 | 662 | - | - | |
Cre07g1510 | 697 | Gene3D | - | 581 | 673 | - | - | |
Cre07g1510 | 697 | MobiDBLite | consensus disorder prediction | 527 | 590 | - | - | |
Cre07g1510 | 697 | SMART | B3_2 | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Cre07g1510 | 697 | FunFam | Auxin response factor | 290 | 361 | - | - | |
Cre07g1510 | 697 | MobiDBLite | consensus disorder prediction | 483 | 511 | - | - | |
Cre07g1510 | 697 | Gene3D | - | 290 | 361 | - | - | |
Cre07g1510 | 697 | ProSiteProfiles | PB1 domain profile. | 586 | 667 | IPR053793 | - | |
Cre07g1510 | 697 | MobiDBLite | consensus disorder prediction | 541 | 555 | - | - | |
Cre07g1510 | 697 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Cre07g1510 | 697 | MobiDBLite | consensus disorder prediction | 429 | 457 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g1510 | Cre-Chr7:30378920 | Cre09g2333 | Cre-Chr9:42605333 | 2.10E-224 | dispersed | |
Cre07g1510 | Cre-Chr7:30378920 | Cre09g0908 | Cre-Chr9:9117104 | 1.20E-211 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54061 | PF02362 | B3 | 8.00E-22 | CL0405 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g1510 | K14486 | - | csv:101213942 | 1244.18 |