Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1510 ATGGCTAATCGGGGAGGAGGGTCATTTTTACCCTCAAATATTCCGCCTCAAGGTTGGGCAGGAGATGAACTTTACGCTGAGCTATGGAGAGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTTTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTATTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGACAGTGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACGAGTCTTGAACCTTCACCCCCAGAGTGTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTCCGGAAACATGCCACCGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTTCGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGACGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCCAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAGAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATAGAAGCGATGAACTATAAGTTCTCAGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGACTGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTCGTGGCTCCTACGTCCCCAAGCATTCCGCACTCTATTTCCATAAAGAATAAAAGGCCTCGGCCTCCACTTGAAATTCTAGATTCTGATAATTCAACTGTAACAACTCTAAGACATCCAGGATCATCTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACATGGCATTACAAGCAAACGGATGTTAGCAGCAATGGGAATTCTGTATCAAGGAGTCCGATGGAGGGCTCTTGGTTAACTTCTCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGAATTGACAGATGACCGTAAGAGCAGTTCTGTTTGGTCAACGGTCTTTCCAGGAGTGCTGGCATCAAACTCGACATGTCCAACTCCACGCCCGTCAAATCCAAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAAGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGAGCTCATCAATCATTCTAAGAGCCCAGTTCCTCCTGAAAGGGTGCCCGATCAACCAATTAGCACACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCCTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCCGTCGGACGTGCGGTGGACCTTACCACATTGGAGGGGTATGGCCAACTCATTGATGAACTAGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGATGAAGGAGATACGATGCTCATGGGCGACTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCGGGTAGCAAACTTGCGATGTCTACAATCGAATGTGACGGGACTGTAATAACCTCGGAGTCAGCCGACAGCTGA 2094 46.7 MANRGGGSFLPSNIPPQGWAGDELYAELWRVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLEPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSDWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISIKNKRPRPPLEILDSDNSTVTTLRHPGSSQSHDDRTQLSVAAAEIKRFENHATWHYKQTDVSSNGNSVSRSPMEGSWLTSPNGSVSQHRLQELTDDRKSSSVWSTVFPGVLASNSTCPTPRPSNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPVPPERVPDQPISTPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGTVITSESADS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30378920 30382530 - CrPI670011_07g015100.1 Cre07g1510 504091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1510 697 Pfam AUX/IAA family 576 622 IPR033389 -
Cre07g1510 697 Pfam AUX/IAA family 633 669 IPR033389 -
Cre07g1510 697 MobiDBLite consensus disorder prediction 365 384 - -
Cre07g1510 697 MobiDBLite consensus disorder prediction 574 590 - -
Cre07g1510 697 FunFam Auxin response factor 127 231 - -
Cre07g1510 697 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
Cre07g1510 697 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre07g1510 697 Gene3D - 126 230 IPR015300 -
Cre07g1510 697 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Cre07g1510 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 673 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre07g1510 697 SUPERFAMILY DNA-binding pseudobarrel domain 116 258 IPR015300 -
Cre07g1510 697 SUPERFAMILY CAD & PB1 domains 580 662 - -
Cre07g1510 697 Gene3D - 581 673 - -
Cre07g1510 697 MobiDBLite consensus disorder prediction 527 590 - -
Cre07g1510 697 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Cre07g1510 697 FunFam Auxin response factor 290 361 - -
Cre07g1510 697 MobiDBLite consensus disorder prediction 483 511 - -
Cre07g1510 697 Gene3D - 290 361 - -
Cre07g1510 697 ProSiteProfiles PB1 domain profile. 586 667 IPR053793 -
Cre07g1510 697 MobiDBLite consensus disorder prediction 541 555 - -
Cre07g1510 697 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Cre07g1510 697 MobiDBLite consensus disorder prediction 429 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1510 Cre-Chr7:30378920 Cre09g2333 Cre-Chr9:42605333 2.10E-224 dispersed
Cre07g1510 Cre-Chr7:30378920 Cre09g0908 Cre-Chr9:9117104 1.20E-211 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54061 PF02362 B3 8.00E-22 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1510 K14486 - csv:101213942 1244.18