Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1548 ATGGCTTCCACAAATAATGATTCATTACACAGCTTCTGCACCAGCAGTCAGGATCCACTCAACTGGGGTGTGGCCGCTGACTCCATGAAGGGAAGTCATTTGGATGAGGTCAAGCGTATGGTGGAAGAGTATCGGACGCCTTTTGTTAAGCTTGGAGGCCAGACTCTCACCATTTCTCAAGTCGCTTCCATTGCCACTCGTGACAACGATGTCATCGTAGAATTGGCCGAGTCTGCGAGGGCCGGTGTAAAAGCCAGCAGCGATTGGGTGATGGAGAGCATGAGCAAAGGCACGGATAGTTATGGTGTTACTACTGGCTTTGGTGCCACTTCCCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGTTGATCCGATTCTTGAATTCCGGTATCTTTGGGACTGGCAGTGAGTCGAGTCACACTTTGCCTCATTCTGCCACAAGGGCGGCCATGTTGGTGAGAATCAACACACTCCTACAAGGCTACTCCGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTTACTCCGTGTTTGCCACTTCGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTTTGTCTTACATTGCAGGGTTGCTCACCGGTCGCCACAATTCAAAAGCGATCGGACCCAATGGAGAACCTCTTGATGCAAAGGCTGCTTTTGAACAAGCTGGCATTGATTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTTGCTCTTGTAAATGGCACCGCTGTCGGTTCTGGGTTGGCCTCCATTGTTCTCTTCGAGACAAATATTTTGGCTGTTTTGTCTGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCTGGCCAAATTGAAGCTGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACTGCTAAGAAATTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATTGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGGGAAATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCGTTGCATGGAGGTAACTTCCAAGGAACGCCAATTGGAGTTTCCATGGACAACACCCGTTTGGCAATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAATAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGCTTCAAAGGTGCTGAGATTGCCATGGCCTCATACTGCTCTGAGCTCCAATATCTTGCAAATCCAGTGACGAGTCATGTCCAGAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACCGCTGAAGCCATCGATATCCTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACAGTGAAAAACACTGTTAGCCAAGTAGCGAAAAAGGTGTTGACTACATCCTCCAATGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACTTACCCACTTATGCAAAAGTTGAGGCAAGTTCTTGTTGAGCATGCACTTGAAAATGGTGATAACGAAGTCAACGCAAACACTTCAATCTTCCAAAAGATTGGTGCTTTCGAAGAGGAATTAAAGGCAATCTTACCGAAGGAGGTTGAAAATGTAAGGATAGCATATGAGAGTGGGAACTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCTTACCCATTATACAGATTTGTGAGAGAGGAGTTGGGAACAAGCTTGCTAACTGGCGAAAAGGTGATATCTCCTGGAGAAGAGTGTGAGAAGGTATTCACGGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTCGAATGCTTAAAGGAGTGGAATGGAGCACCAATCCCTATTTGCTAA 2130 44.74 MASTNNDSLHSFCTSSQDPLNWGVAADSMKGSHLDEVKRMVEEYRTPFVKLGGQTLTISQVASIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGTGSESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEPLDAKAAFEQAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFETNILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALENGDNEVNANTSIFQKIGAFEEELKAILPKEVENVRIAYESGNSKIENQIKDCRSYPLYRFVREELGTSLLTGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30908171 30910300 + CrPI670011_07g015480.1 Cre07g1548 504129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1548 709 FunFam Phenylalanine ammonia-lyase 256 560 - -
Cre07g1548 709 Gene3D - 10 255 IPR024083 -
Cre07g1548 709 Gene3D - 522 643 IPR023144 -
Cre07g1548 709 FunFam Phenylalanine ammonia-lyase 9 255 - -
Cre07g1548 709 CDD PAL-HAL 54 519 IPR001106 -
Cre07g1548 709 Pfam Aromatic amino acid lyase 56 534 IPR001106 -
Cre07g1548 709 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 191 207 IPR022313 GO:0016841(InterPro)
Cre07g1548 709 PANTHER HISTIDINE AMMONIA-LYASE 15 709 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre07g1548 709 SUPERFAMILY L-aspartase-like 18 709 IPR008948 GO:0003824(InterPro)
Cre07g1548 709 FunFam Phenylalanine ammonia-lyase 522 643 - -
Cre07g1548 709 NCBIfam phenylalanine ammonia-lyase 18 699 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cre07g1548 709 Gene3D Fumarase/aspartase (Central domain) 256 704 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1006 Cre-Chr4:28673471 Cre07g1548 Cre-Chr7:30908171 0.00E+00 dispersed
Cre04g1007 Cre-Chr4:28677317 Cre07g1548 Cre-Chr7:30908171 8.50E-52 dispersed
Cre07g1548 Cre-Chr7:30908171 Cre08g0711 Cre-Chr8:20130380 0.00E+00 dispersed
Cre07g1547 Cre-Chr7:30903449 Cre07g1548 Cre-Chr7:30908171 0.00E+00 tandem
Cre07g1548 Cre-Chr7:30908171 Cre07g1549 Cre-Chr7:30913399 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1548 K10775 - csv:116401606 1330.47