Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1573 ATGGATTTTCCAATACCAGAACCATCCCCTTCTGAAACTTCAACAATCATCTCTGCTTCAGAGTCTTCTCCACCATGTCCAAAGGGGGATCGAATAACAGACCAAATTAACCCTAATTCTCAACTGGGTTTGGATCTGAGCCTTTCTAATAAAGATTCCGATCATGGGTCGAACCCAGAACTCAATCTAATCGACTGTTTCGATGTGAATTTAACAACAGAACCTACAGATACAGAAACAGAGCCCAGGGTTTTCTCTTGCAACTATTGCCAGAGGAAATTTTACAGTTCTCAAGCTCTTGGGGGACACCAAAATGCCCACAAGCGAGAGAGGACTTTAGCAAAGAGGACTCAACGGGTCGGGTCGGCCTCTAATTTCGGGCTTGCTCATCGGTATTCGAGTTTGGCTTCTCTTCCTCTTCATGGGTCGTTCAGTAGGTCGCTTGGAATTCAAGCTCATTCCATGGTTCATAAGCCTTCTTCTCTTCATGTTTCTGCAATTGGGTCATCTGGAATTTATGGTCACAGTGGATGGTCAAGGCAGCCGCTCGATCAACACCCGGCGATTGGCCGGTTGATGCAGGGAAATTCCCACGTTGGAAGTCTTAGAGGCATTTCGTCGAACACTGGAGCTGCAAGGTTTCAGGGTGTGAAGAAATTCTCTCCGGCGGCAGACACGGAGGCGCCACCGCCTCTCGGAGGGTTCTGGTGGGATGGCGGCGGTGGTGGTGGTTTTAGTCATCTGAAGATGAAGCCTAAACAAGATGAGTTGTTGAAGCTTGACTTGTCTCTTAAGCTCTAA 801 47.82 MDFPIPEPSPSETSTIISASESSPPCPKGDRITDQINPNSQLGLDLSLSNKDSDHGSNPELNLIDCFDVNLTTEPTDTETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRTQRVGSASNFGLAHRYSSLASLPLHGSFSRSLGIQAHSMVHKPSSLHVSAIGSSGIYGHSGWSRQPLDQHPAIGRLMQGNSHVGSLRGISSNTGAARFQGVKKFSPAADTEAPPPLGGFWWDGGGGGGFSHLKMKPKQDELLKLDLSLKL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31210548 31211348 + CrPI670011_07g015730.1 Cre07g1573 504154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1573 266 FunFam Zinc finger protein 2 67 131 - -
Cre07g1573 266 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 266 IPR044246 GO:0009788(InterPro)
Cre07g1573 266 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Cre07g1573 266 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Cre07g1573 266 MobiDBLite consensus disorder prediction 8 22 - -
Cre07g1573 266 Gene3D Classic Zinc Finger 66 130 - -
Cre07g1573 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Cre07g1573 266 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1343 Cre-Chr4:32254955 Cre07g1573 Cre-Chr7:31210548 4.80E-14 dispersed
Cre05g1213 Cre-Chr5:11778165 Cre07g1573 Cre-Chr7:31210548 2.20E-20 dispersed
Cre05g1812 Cre-Chr5:30230341 Cre07g1573 Cre-Chr7:31210548 3.70E-23 dispersed
Cre07g1573 Cre-Chr7:31210548 Cre09g1859 Cre-Chr9:37073106 2.50E-24 dispersed
Cre06g2197 Cre-Chr6:29783731 Cre07g1573 Cre-Chr7:31210548 4.20E-13 transposed
Cre07g0530 Cre-Chr7:3164232 Cre07g1573 Cre-Chr7:31210548 1.00E-10 transposed
Cre10g1757 Cre-Chr10:31968647 Cre07g1573 Cre-Chr7:31210548 7.30E-14 transposed
Cre11g1734 Cre-Chr11:28956510 Cre07g1573 Cre-Chr7:31210548 5.90E-17 transposed
Cre07g1573 Cre-Chr7:31210548 Cre08g1307 Cre-Chr8:26153291 1.80E-30 wgd
Cre07g1573 Cre-Chr7:31210548 Cre09g0308 Cre-Chr9:3001650 3.20E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54067 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1573 - - - 0.0