Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1601 ATGGCAAGACCTCAACAACGCCATCGAGGAGTTCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACAGCGGAAGACGCCGCCAGAGCATATGACGAAGCAGCTACAATTATGTGTTGCCCTAACAATCTCCCAACCAATCACAATGCGCCACCTCACCTCTCGTCGGCGCCGCCGTCGTCTAAGCTTCTAACTCCCACTTTGATCGACAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCAATTCGCCCTCCGGAAATCCGCCGACCCAACTCACCGTCCGGCCACCAAACTCCACGACGGTCACTGGTCGGAAACAGAGGTCAAGTGGGTCGCCGGTGGGGAGGCTGAGGAGGTCCGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTTGGTTCTACAAATAATTAG 531 51.98 MARPQQRHRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNHNAPPHLSSAPPSSKLLTPTLIDKLQRCRMASLQMTKTQFALRKSADPTHRPATKLHDGHWSETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTNN 176
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 31494092 31495462 - CrPI670011_07g016010.1 Cre07g1601 504182
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1601 176 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 106 IPR050913 -
Cre07g1601 176 SUPERFAMILY DNA-binding domain 8 56 IPR016177 GO:0003677(InterPro)
Cre07g1601 176 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1601 176 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1601 176 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1601 176 CDD AP2 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1601 176 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1601 176 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1601 176 SMART rav1_2 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1601 Cre-Chr7:31494092 Cre08g1304 Cre-Chr8:26119715 2.00E-38 dispersed
Cre05g1816 Cre-Chr5:30276361 Cre07g1601 Cre-Chr7:31494092 2.80E-38 wgd
Cre07g1601 Cre-Chr7:31494092 Cre08g1303 Cre-Chr8:26112391 1.30E-37 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54070 PF00847 AP2 1.70E-10 CL0081 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1601 - - - 0.0