Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1627 ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACGGCCGAAGATGCAGCTCGAGCCTACGATGAGGCGGCCGTTCTCATGAGCGGTCGAACTGCAAAAACCAACTTTCCAATGTCGACCGCCTTGGTTCGAAGTGAAGCTAGAAATATTCCTCCATTTTCGTCATTGTCAACAATTCTCAACACTAAACTTCGCAAGTGTTGGAAATCTTTTCCTCCTTCTCTAACTTGCCTTCGTCTCGACGCCGAGAGTTGTCGCATTGGCGTTTGGCAGAGGCGTGCAGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAGAAGAACGACGGATTCCGAGTAACGGATGAGTCGCCGGAAAAGGGTGCGGAAGATCAGGTGAGACTTTCAGATGGGGCAAAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTGCAAATGATTGAAGAACTTTTGAATAAGATATGA 564 48.76 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPMSTALVRSEARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDGFRVTDESPEKGAEDQVRLSDGAKSLDEEERAALQMIEELLNKI 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31748616 31749469 + CrPI670011_07g016270.1 Cre07g1627 504208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1627 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cre07g1627 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1627 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cre07g1627 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1627 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1627 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1627 187 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1627 187 Coils Coil 166 186 - -
Cre07g1627 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 125 IPR050913 -
Cre07g1627 187 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1627 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1858 Cre-Chr5:30739769 Cre07g1627 Cre-Chr7:31748616 6.50E-51 dispersed
Cre07g1627 Cre-Chr7:31748616 Cre08g1303 Cre-Chr8:26112391 3.80E-27 dispersed
Cre11g0788 Cre-Chr11:5085775 Cre07g1627 Cre-Chr7:31748616 4.80E-46 wgd
Cre06g1979 Cre-Chr6:27189274 Cre07g1627 Cre-Chr7:31748616 1.00E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54071 PF00847 AP2 4.60E-12 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1627 - - - 0.0