Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1671 ATGGGTGCCGACATGTCCAACAATAATAATACTAATCGCCTTGCTTTTACCAAAGACTTCTTTTCCTCTCCGGCTCTTTCTCTTACCCTTGCGGGGATTTTCCGTCGGGGTGAGGTGGCGGAGAAGGGAGATGTTGAGATGGAGGAGGTGGACGATGGTAGCGGTGGAGCGCGGAGAGATGATACGGCGGCCGAAGTTAGTAGCGAGAATTCGGGACCAGTGAGGTCGAGGTCAGACGACGACGGTTTCGACGGCGGAGGAGCGCACGACGAGAATGAAGATGGGGTGGATCATGGGTGTCATGTAAAGAGAAGGAAGAAATATCATCGACATACAACCGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCAGATGAGAAGCAAAGGCAACAGCTTAGCAAGCGATTAGGACTTTCGCCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACTCAAATCAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAATTAAAGGAATGAGAGAAATTTGTAGGAAAAAAGTTGGTTGTCCAAACTGTGGGACGGCCGACGTCGGTGAAGACCACATCGCTTTTACAACCACGGAGCAATTGCGTATTAAGAACGCCAAGCTCAAAGCCGAGGTTGAGAAACTACGAGCGGCACTGGGAAAATACCCACAAGCAGCGGCGTCTCCTTCATATTCATCAGGGAACGAGCAAGAGACGAGGAAGCGAAGCTGCTTAGATTTTTACACAGGAAATTTCGGGGTTGAAAAGTCAAGGATGATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTACCGCCGGCGACCCACTATGGGTCCGCAGCGTGGAGAGCGGAAGACAGATATTAAACTACGATGAGTACTTGAAAACCTTCCATTTCAACAATAATAATAATTCCAACACTCGTTCCCTCAAAACACACATTGAAGCCTCACGTGAGACTGCCCTTGTTTTCATGGACCCCTCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCCAAGGCAGCTACAGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTTGAATAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTTACACCATTAGTTCCCACGAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCCGAACAATGGGCGATAGTCGATGTTTCGATTGAAAACATTGAAGATAACAATAATATCGATGCATCGTTGGTAAAATATAGAAAACGTCCATCTGGTTGCATCATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAACAAAGTTCACAACTTGTATAGAAACATAGTGAACAATGGCACTGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAACTGGAGTTGCAACACTAGCTGGAAGAAAAAGCACATTAAAGTTGGCACAGAGAATGAGTTCAAGCTTCTCCCAAGCAATTGCAGCTTCAAGTTATCAAACATGGACCAAAGTTGTGGGGAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTTAGTGACCCTGGTGAACCCATTGGAGTTATTTTGTGTGCAGTTTCTTCTCTTTGGTTGCCTCTTTCTCCCCATCTTCTCTTTGATTTTTTCAGAGATGAATCTCGTCGAAATCAGTGGGACGCCATGTTTGGTGGAGATAAAGTTAAGTCCATTGCAAATTTAGCTAAAGGACAGGATCGAGGCAACTCAGTTACCATTCAAACAATAGGATCAAAAGAGAGCAACAACATGTGGATCCTACAAGACAGCTCCACAAACTCATCGGAATCCATGGTGGTATACTCTGGAGTAGACATTAGCAGCATGCAGTCAGTGATGTCTGGTTGTGATTCCGGCAGCGTCACCATCCTCCCTTCAGGCTTTTCAATTCTCCCCGACGGCGCCGACTCCCGGCCGCCCCTCCTCATCACTCGTCGTAAAGACGACAAAGCTTCCGACACTCATGGCGGCGTTCTACTCACCGCGGCCGTCCAAATCCTCACCGATACGTCTCCCTCTGCAAAACCCACCATGGAATCCATTGAGTACGTTAAAAGCATCATTTGTTGTACGCTCAAAAATATTAGAACCAGCATGTGCTGTGAGGATGATTGA 2316 45.81 MGADMSNNNNTNRLAFTKDFFSSPALSLTLAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDTAAEVSSENSGPVRSRSDDDGFDGGGAHDENEDGVDHGCHVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREEIKGMREICRKKVGCPNCGTADVGEDHIAFTTTEQLRIKNAKLKAEVEKLRAALGKYPQAAASPSYSSGNEQETRKRSCLDFYTGNFGVEKSRMMEKVDEAVEELKTMATAGDPLWVRSVESGRQILNYDEYLKTFHFNNNNNSNTRSLKTHIEASRETALVFMDPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANLNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENIEDNNNIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECEKNKVHNLYRNIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRNQWDAMFGGDKVKSIANLAKGQDRGNSVTIQTIGSKESNNMWILQDSSTNSSESMVVYSGVDISSMQSVMSGCDSGSVTILPSGFSILPDGADSRPPLLITRRKDDKASDTHGGVLLTAAVQILTDTSPSAKPTMESIEYVKSIICCTLKNIRTSMCCEDD 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32164351 32172820 - CrPI670011_07g016710.1 Cre07g1671 504252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1671 771 MobiDBLite consensus disorder prediction 39 65 - -
Cre07g1671 771 FunFam Homeobox-leucine zipper protein HDG1 89 178 - -
Cre07g1671 771 SUPERFAMILY Bet v1-like 529 703 - -
Cre07g1671 771 Gene3D - 277 505 IPR023393 -
Cre07g1671 771 SMART START_1 275 506 IPR002913 GO:0008289(InterPro)
Cre07g1671 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 768 IPR042160 -
Cre07g1671 771 MobiDBLite consensus disorder prediction 39 112 - -
Cre07g1671 771 SUPERFAMILY Bet v1-like 269 507 - -
Cre07g1671 771 Coils Coil 161 188 - -
Cre07g1671 771 Gene3D - 94 175 - -
Cre07g1671 771 FunFam Homeobox-leucine zipper protein GLABRA 2 276 505 - -
Cre07g1671 771 SUPERFAMILY Homeodomain-like 93 163 IPR009057 -
Cre07g1671 771 Coils Coil 213 233 - -
Cre07g1671 771 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre07g1671 771 Pfam Homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Cre07g1671 771 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677(InterPro)
Cre07g1671 771 SMART HOX_1 104 166 IPR001356 GO:0003677(InterPro)
Cre07g1671 771 MobiDBLite consensus disorder prediction 74 101 - -
Cre07g1671 771 ProSiteProfiles START domain profile. 267 509 IPR002913 GO:0008289(InterPro)
Cre07g1671 771 CDD homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Cre07g1671 771 Pfam START domain 279 506 IPR002913 GO:0008289(InterPro)
Cre07g1671 771 CDD START_ArGLABRA2_like 271 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0780 Cre-Chr6:1186091 Cre07g1671 Cre-Chr7:32164351 4.90E-151 dispersed
Cre07g1671 Cre-Chr7:32164351 Cre09g1114 Cre-Chr9:11791150 8.10E-124 dispersed
Cre07g1671 Cre-Chr7:32164351 Cre09g0182 Cre-Chr9:2056253 8.70E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54075 PF01852 START 1.30E-54 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1671 K09338 - csv:101221341 1320.45