Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1686 ATGGCGGAACCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGACGGATCGAGAACAGAGAGATCAGAAACACCCAATTTACAGAGGCGTACGGAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGGCAGCCGAGGAAGAAGTCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCAGCGCGTGCACACGACGTGGCGGCGCTCAGCATCAAAGGTGATTCAGCAAAGGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTTCCACGGCCGGTGTCCTTAATGCCGAGGGATATTCAGGAGGCGGCTGCCAAGGCGGCGGCCATGGTCGATTTCGATTCCACTACGGCGTCGTTTTCGTCGTTTAATGATGAAGAAGGGTCAGAGGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGATATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTTGCGGCCGGGGAATTGGATTTCTGTGCGGTGTTTTCAGATCAGAGTACTACTCCGGTTACCTTCGACGGCGGCGATTGGGAGTGA 612 52.29 MAEPNNWNSESESTEMKRGKQTDREQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSTTASFSSFNDEEGSEELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFAAGELDFCAVFSDQSTTPVTFDGGDWE 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32302488 32303099 - CrPI670011_07g016860.1 Cre07g1686 504267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1686 203 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1686 203 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1686 203 MobiDBLite consensus disorder prediction 13 32 - -
Cre07g1686 203 MobiDBLite consensus disorder prediction 1 34 - -
Cre07g1686 203 Pfam AP2 domain 33 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1686 203 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677(InterPro)
Cre07g1686 203 SMART rav1_2 33 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1686 203 FunFam Ethylene-responsive transcription factor 2 32 93 - -
Cre07g1686 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 152 IPR051032 -
Cre07g1686 203 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1686 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre07g1686 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1686 Cre-Chr7:32302488 Cre09g0167 Cre-Chr9:1934111 1.20E-47 dispersed
Cre11g0713 Cre-Chr11:4246311 Cre07g1686 Cre-Chr7:32302488 8.20E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54077 PF00847 AP2 9.40E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1686 K09286 - csv:101222354 363.229