Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1748 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGTCTAGTGGACCCCAAGTAACTGTGGCCTTGGATGAACTGTATAAGATCTTCTTCGAGTCTGTTCCTAGATGCATCTTTGAGATTGCTTATGTTCCAGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGCGGTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACTTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTTGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCCCAACAGATTGAGAAGGTTATGCGGGCCCTTGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCTACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTTACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGACTGGAAGCTCGAGACTCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGATCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCTCTCGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCGATCAACTTTGTAACGACGGAGGACGAAAGAATGCTATTTGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA 2142 44.07 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKSSGPQVTVALDELYKIFFESVPRCIFEIAYVPDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQQTMGAVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32945787 32955200 + CrPI670011_07g017480.1 Cre07g1748 504329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1748 713 FunFam Eukaryotic initiation factor 4A-III 548 713 - -
Cre07g1748 713 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 552 713 IPR001650 -
Cre07g1748 713 Pfam linker histone H1 and H5 family 147 206 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre07g1748 713 Pfam Helicase conserved C-terminal domain 566 674 IPR001650 -
Cre07g1748 713 CDD SF2_C_DEAD 553 683 - -
Cre07g1748 713 SUPERFAMILY Winged helix DNA-binding domain 142 224 IPR036390 -
Cre07g1748 713 SMART ultradead3 359 556 IPR014001 -
Cre07g1748 713 CDD SANT_TRF 6 88 - -
Cre07g1748 713 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Cre07g1748 713 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 371 541 IPR014001 -
Cre07g1748 713 FunFam Telomere repeat-binding factor 1 2 54 - -
Cre07g1748 713 SMART helicmild6 593 674 IPR001650 -
Cre07g1748 713 Pfam Myb-like DNA-binding domain 5 33 IPR001005 -
Cre07g1748 713 Gene3D - 549 713 IPR027417 -
Cre07g1748 713 CDD DEADc_EIF4A 345 542 - -
Cre07g1748 713 Gene3D - 142 229 IPR036388 -
Cre07g1748 713 SMART h15plus2 143 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre07g1748 713 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 213 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre07g1748 713 SUPERFAMILY Homeodomain-like 2 50 IPR009057 -
Cre07g1748 713 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 487 495 IPR000629 -
Cre07g1748 713 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 337 699 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cre07g1748 713 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 340 368 IPR014014 GO:0003724(InterPro)
Cre07g1748 713 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cre07g1748 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 694 IPR027417 -
Cre07g1748 713 Gene3D - 2 90 - -
Cre07g1748 713 FunFam Eukaryotic initiation factor 4A-II 328 547 - -
Cre07g1748 713 Pfam DEAD/DEAH box helicase 365 527 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cre07g1748 713 Gene3D - 330 548 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1748 Cre-Chr7:32945787 Cre10g1343 Cre-Chr10:27022950 1.10E-140 dispersed
Cre05g0244 Cre-Chr5:2327081 Cre07g1748 Cre-Chr7:32945787 8.10E-73 transposed
Cre05g1387 Cre-Chr5:16250198 Cre07g1748 Cre-Chr7:32945787 3.00E-56 transposed
Cre07g0578 Cre-Chr7:3541384 Cre07g1748 Cre-Chr7:32945787 3.00E-45 transposed
Cre07g1727 Cre-Chr7:32720645 Cre07g1748 Cre-Chr7:32945787 1.20E-50 transposed
Cre08g1275 Cre-Chr8:25889458 Cre07g1748 Cre-Chr7:32945787 5.00E-63 transposed
Cre09g0293 Cre-Chr9:2887492 Cre07g1748 Cre-Chr7:32945787 9.20E-49 transposed
Cre07g1748 Cre-Chr7:32945787 Cre09g0071 Cre-Chr9:957910 4.40E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54083 PF00270 DEAD 1.20E-39 CL0023 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1748 K03257 - csv:101223055 817.379