Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1779 ATGAGACCGCTCCAGCCGCCTCAGGGTGCGAATCCTCCCACCGATCGTACTCGTCGTCGACCGCAGCTAAATAATCTTCAGCTTCCGCAGAGGGACAATACGTCTTTGGCTGTTCCTCTCCCTTTGCCTCCCACCTCCTCCAACTCTGCGCATCCTCCTTCCACCAGTCAACTCCACAACGCCAACCGCCCGCCGGACCCTCATCCTCAGAAGCGTCAGGCTTTTAGCCTTTCGGATTTTGAGCGAGTGAGCCGAATCGGAAGTGGATGCGGAGGCACCGTCTATAAAGTGGTTCACCGTCCCACCGGCGGTGTTTATGCTCTCAAGGTCATTTACGGCAACCATGAGGATGCGGTTAGGCTCCAGATGTGCCGGGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCATAACGGCGAAATCCAGGTTCTTCTTGAGTACATGGATCGGGGTTCTTTAGAAGGAACGCACATCCCTCAAGAACACCATCTCTCTGATTTGGCTCGCCAGATTCTTAGCGGCCTCGCTTATCTCCATAGCCGCCGTATCGTCCATCGCGACATCAAACCCTCGAATCTCCTCATCAATTCCCGAAGACAGGTTAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGCAATTCCTCGGTTGGGACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGGTATGCTGGTGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGTCGGTTTCCTCTTGCTGTCGAGAGACCTGGGGATTGGGCGAGCTTGATGTGCGCTATTTGTATGGCTCAGCCACCAGAGGCCCCGCCCACTGCTTCCCCGGAGTTTCGCCACTTTATTGCCTGTTGTTTGCAAAGAGAGGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAACCAGGAAAAATGGAGCAACTCAGTACCAGAATCAGCAAGCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCACCCCTTCATCCTTCCAGCCTTTCCTGA 1110 52.34 MRPLQPPQGANPPTDRTRRRPQLNNLQLPQRDNTSLAVPLPLPPTSSNSAHPPSTSQLHNANRPPDPHPQKRQAFSLSDFERVSRIGSGCGGTVYKVVHRPTGGVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGATQYQNQQAHHQNLRQLLPPPPLHPSSLS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33258926 33260035 + CrPI670011_07g017790.1 Cre07g1779 504360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1779 369 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 60 342 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cre07g1779 369 Gene3D Transferase(Phosphotransferase) domain 1 161 358 - -
Cre07g1779 369 CDD PKc_MAPKK_plant_like 78 336 - -
Cre07g1779 369 MobiDBLite consensus disorder prediction 11 63 - -
Cre07g1779 369 SMART serkin_6 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1779 369 FunFam Dual specificity mitogen-activated protein kinase kinase 67 158 - -
Cre07g1779 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1779 369 SUPERFAMILY Protein kinase-like (PK-like) 59 355 IPR011009 -
Cre07g1779 369 FunFam Mitogen-activated protein kinase 2 160 348 - -
Cre07g1779 369 MobiDBLite consensus disorder prediction 345 369 - -
Cre07g1779 369 ProSiteProfiles Protein kinase domain profile. 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1779 369 Gene3D Phosphorylase Kinase; domain 1 55 159 - -
Cre07g1779 369 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524(InterPro)
Cre07g1779 369 Pfam Protein kinase domain 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1779 369 MobiDBLite consensus disorder prediction 1 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1779 K13413 - - csv:101219669 688.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1381 Cre-Chr1:27039926 Cre07g1779 Cre-Chr7:33258926 2.90E-86 dispersed
Cre07g1779 Cre-Chr7:33258926 Cre11g0697 Cre-Chr11:4058159 3.80E-55 dispersed
Cre07g1776 Cre-Chr7:33224049 Cre07g1779 Cre-Chr7:33258926 3.70E-18 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g955 . . . . . . Bma10g00703 . . . . . . Car14g01085 . . . . . . . . . . Cla07g01350 Cam07g1143 Cec07g1538 Cco07g1499 Clacu07g1422 Cmu07g1398 Cre07g1779 Cone20ag1378 . . . . . . . . . . . . . . . . . . . . . . . Cpe03g01040 . . . . . . . . . . . . . . Lsi07g00631 Csa03g02812 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g1805 . 28 333 MAP Kinase Kinase Gene Family AT4G26070 71.6 1.1e-128 456.8
Cre11g0661 . 27 330 MAP Kinase Kinase Gene Family AT4G26070 66.9 1.0e-118 423.7
Cre11g0697 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 56.3 1.2e-108 390.2
Cre03g1805 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.5e-133 472.2
Cre11g0661 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 3.2e-117 418.7
Cre11g0697 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 4.5e-111 398.3
Cre10g1535 . 78 529 MAP Kinase Kinase Gene Family AT5G40440 80.3 6.5e-215 743.8
Cre07g1779 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.4e-134 476.5
Cre07g1779 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.4e-128 456.4
Cre01g1381 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.2e-84 309.7
Cre11g0697 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 84.0 2.2e-169 592.0
Cre03g1805 . 7 332 MAP Kinase Kinase Gene Family AT5G56580 61.5 8.4e-116 414.1
Cre11g0661 . 1 330 MAP Kinase Kinase Gene Family AT5G56580 56.0 5.6e-104 374.8
Cre01g1381 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.6 5.0e-109 391.3
Cre01g1381 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 6.5e-82 301.2
Cre01g1381 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.4 6.2e-115 411.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64290 PF00069 Pkinase 7.10E-60 CL0016 Cre PK