Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre07g1780 | ATGGGGAAGACGCAAGAGGACGATATTTCGCAGAAGCTTCCTCGCTGCTGTGGAACTTCGCTATATTGCCTTCGCTTCCCATCAGCCACCCCAACTCGACTTCTTCTTCGCTTGATCTATAATTTTGGTGAAGTCGAGAATCTTATTTCCAAGAACTTTCCTTCTGGCTGGCCTTTGCCGGCTGTGGTGGCCAGAGATTTTATTTTTAAGCAACTGAATCACCTATACGATCCAAACTACTGGGATTCGACCTGGATATCCTCGTTGCGTCAGTTCAACTTCATCTCCAATCTGATGGGATCAACAGAGGAGAAAACAAATTACCTATCAGACGAAGAACTTCCGTTGAAGTCATCACCAGTCGCGAAGAACGTATTGCATAGCTTTGATTGTGAGACGGCTCCTGTACGTTCTTCCCCAGATGATACAAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTGGTTAGAGCAAAGATCAACGTGCTTCTACCTTTTGGTCCTTTGGCAATTCTGCTACATTACTTAACGGGAAAGCATGGATTGGTCTTCTTTTTCACTTTACTTGGAATTACACCCTTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTTCTACACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACTTTTGGAAATGCAACTGAAATGATTATTTCAATATATGCGTTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCATTACTGGGGTCAATCTTGTCAAATATGCTTCTTGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTGTTCATCATAAGAAGGTGCAGGTTTTCAATAAGGGTGCTGCTGTTGTGAATTCGGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTCCCGGCAGTGCTTCATTTCACCCACACAGAACTTCATTCCGGAGAGTCAGCATTATCTCTTTCAAGATTTAGCAGTTGTATAATGTTAGTTGCATATGCGAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTCCCCTTGATGAGGAAGTTGGTGATGAAGTTGAGGATGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCCATCTTGACTGTATGGGTATCTATTTTATCTGGATACCTTGTTGATGCTATCCAGGGAGCATCTGAATCATTAAATTTGCCAGTGGCTTTTATTAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCTGAGCATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCACCCTTGGGGTTGCTATTGGATCATCAACACAAATATCCATGTTTGTGATCCCGTTTTGCGTAGTAGTTGGATGGTGCATGGGAGAACCAATGGACTTGAACTTTAAACTCTTTGAAACAGCAACTTTGTTTATCACTGTGCTGGTGGTGGCCTTTATGTTGCAGGAGGGGACATCAAATTATTTCAAAGGTCTAATGCTTATTCTATGTTACCTCATAGTGGCAGCCAGTTTTTTTGTACACGTTGACCCTAGTAATGATGATGATTAA | 1584 | 41.92 | MGKTQEDDISQKLPRCCGTSLYCLRFPSATPTRLLLRLIYNFGEVENLISKNFPSGWPLPAVVARDFIFKQLNHLYDPNYWDSTWISSLRQFNFISNLMGSTEEKTNYLSDEELPLKSSPVAKNVLHSFDCETAPVRSSPDDTRWWKTNNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGLVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQVFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLVAYASYLFFQLKSQHNLYGPLDEEVGDEVEDDSEIYAWEAIGWLAILTVWVSILSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGEPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNDDD | 527 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 33261431 | 33266875 | + | CrPI670011_07g017800.1 | Cre07g1780 | 504361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre07g1780 | 527 | FunFam | Vacuolar cation/proton exchanger | 362 | 518 | - | - | |
| Cre07g1780 | 527 | NCBIfam | calcium/proton exchanger | 171 | 517 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
| Cre07g1780 | 527 | Pfam | Sodium/calcium exchanger protein | 190 | 345 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre07g1780 | 527 | Pfam | Sodium/calcium exchanger protein | 374 | 516 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre07g1780 | 527 | Gene3D | - | 219 | 518 | IPR044880 | - | |
| Cre07g1780 | 527 | FunFam | Vacuolar cation/proton exchanger | 219 | 358 | - | - | |
| Cre07g1780 | 527 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 133 | 522 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre07g1780 | Cre-Chr7:33261431 | Cre10g0647 | Cre-Chr10:6088277 | 1.60E-152 | dispersed | |
| Cre07g1780 | Cre-Chr7:33261431 | Cre04g0802 | Cre-Chr4:26701840 | 2.10E-91 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre07g1780 | K07300 | - | csv:101219432 | 811.601 |