Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1782 ATGTTCTTGGTGGATGCAGGACTTGGGACCCCCATAATTTGTATGCAAGATGAGCCTATAGGAGTGTCAATCAACCGAGCCACCAGGTTTGAGAATAAGGTGGGATCCGTGGATCTAGTGGCCGGTGAATCACTGATCAAACATCAAATTTTGGAGAGATTCTTCATTGATCTAGTGGCCAGCGAATCACTGATCAAAGAGCGAGCTGTCGCCAGCAAAGCTGTTTGTGAAAATGCCGCAGAGGCAGACCCCACTCCAAAGTTGTCGTGGAGCCCAACTCTTGCGAGCTCAGTCCCACCATTCGTCCGGATTTCAACCCTTGTGTTGGGCTTTGCCCTTGATTTTGATCCCTTCAGATATTCCTTAATCTGCTTTGTAGAGCTTGGTGCTGGCCATATTTGTCCTGCCTGCCAGAGCTATAAAGAAACATTTTTCCCATTCTTAGAAAAGGGAAGAAGGGAAAGAGCAAGTGATTTTATCAATGGAGCTACGGATCCAGGAGATGTCTCGGCGCTAAATGCAATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAAGTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGCATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGACGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAGTGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGAACGGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATTCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGCTTTATAACCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAGTGCTCCTGAGGTTACAATGTCTGGCCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGCGGACGCAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTAACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGACGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCTGATACACGCGAGACATCTTAA 2583 44.13 MFLVDAGLGTPIICMQDEPIGVSINRATRFENKVGSVDLVAGESLIKHQILERFFIDLVASESLIKERAVASKAVCENAAEADPTPKLSWSPTLASSVPPFVRISTLVLGFALDFDPFRYSLICFVELGAGHICPACQSYKETFFPFLEKGRRERASDFINGATDPGDVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTSLSNLDVSNNNLGPDIPYQLPQNLQKLNLAWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSVSPASNEVQDTLAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTPPISVKSYSIADLQMATGSFSVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSFNILLDAEMNPHLSDCGLASFITNLDQVLDQQPGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDTRETS 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33278222 33286523 + CrPI670011_07g017820.1 Cre07g1782 504363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1782 860 MobiDBLite consensus disorder prediction 501 524 - -
Cre07g1782 860 MobiDBLite consensus disorder prediction 845 860 - -
Cre07g1782 860 Gene3D Transferase(Phosphotransferase) domain 1 634 850 - -
Cre07g1782 860 MobiDBLite consensus disorder prediction 838 860 - -
Cre07g1782 860 Pfam Leucine rich repeat N-terminal domain 166 205 IPR013210 -
Cre07g1782 860 SMART LRR_typ_2 231 255 IPR003591 -
Cre07g1782 860 SMART LRR_typ_2 277 300 IPR003591 -
Cre07g1782 860 SMART LRR_typ_2 301 324 IPR003591 -
Cre07g1782 860 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 633 841 - -
Cre07g1782 860 PANTHER LEUCINE RICH REPEAT KINASE 2 431 829 IPR051420 -
Cre07g1782 860 Pfam Protein tyrosine and serine/threonine kinase 557 827 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1782 860 MobiDBLite consensus disorder prediction 455 475 - -
Cre07g1782 860 ProSiteProfiles Protein kinase domain profile. 555 830 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1782 860 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 165 391 - -
Cre07g1782 860 CDD STKc_IRAK 561 830 - -
Cre07g1782 860 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 519 632 - -
Cre07g1782 860 Gene3D Ribonuclease Inhibitor 165 385 IPR032675 -
Cre07g1782 860 MobiDBLite consensus disorder prediction 379 404 - -
Cre07g1782 860 SUPERFAMILY Protein kinase-like (PK-like) 535 827 IPR011009 -
Cre07g1782 860 Pfam Leucine rich repeat 255 312 IPR001611 GO:0005515(InterPro)
Cre07g1782 860 Gene3D Phosphorylase Kinase; domain 1 516 632 - -
Cre07g1782 860 SUPERFAMILY L domain-like 164 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1782 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0464 Cre-Chr2:1860602 Cre07g1782 Cre-Chr7:33278222 1.00E-105 dispersed
Cre04g1889 Cre-Chr4:36527528 Cre07g1782 Cre-Chr7:33278222 5.20E-104 dispersed
Cre07g1782 Cre-Chr7:33278222 Cre07g1939 Cre-Chr7:34842364 4.90E-69 dispersed
Cre01g0871 Cre-Chr1:11709977 Cre07g1782 Cre-Chr7:33278222 1.00E-152 transposed
Cre08g0455 Cre-Chr8:15567662 Cre07g1782 Cre-Chr7:33278222 4.70E-163 transposed
Cre10g1853 Cre-Chr10:33120983 Cre07g1782 Cre-Chr7:33278222 3.20E-98 transposed
Cre07g1782 Cre-Chr7:33278222 Cre09g0136 Cre-Chr9:1624505 1.20E-203 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre01g0871 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.6e-85 312.4
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre07g1782 . 159 853 Strubbelig Receptor Gene Family AT1G53730 60.5 5.9e-201 698.0
Cre09g0136 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.9e-186 647.9
Cre01g0871 . 9 689 Strubbelig Receptor Gene Family AT1G53730 50.7 1.8e-146 516.9
Cre07g1782 . 159 848 Strubbelig Receptor Gene Family AT3G14350 57.0 2.1e-179 626.3
Cre09g0136 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.4e-167 587.0
Cre01g0871 . 138 711 Strubbelig Receptor Gene Family AT4G22130 62.8 1.9e-178 622.9
Cre07g1782 . 532 860 Strubbelig Receptor Gene Family AT4G22130 63.7 5.2e-120 428.7
Cre09g0136 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 5.4e-117 418.7
Cre02g0464 . 483 788 Strubbelig Receptor Gene Family AT4G22130 59.9 3.8e-107 386.0
Cre04g1889 . 442 730 Strubbelig Receptor Gene Family AT4G22130 59.8 5.0e-99 359.0
Cre08g0455 . 359 706 Strubbelig Receptor Gene Family AT4G22130 51.8 6.6e-99 358.6
Cre10g1853 . 365 687 Strubbelig Receptor Gene Family AT4G22130 52.6 1.9e-93 340.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64291 PF07714 PK_Tyr_Ser-Thr 3.30E-40 CL0016 Cre PK