Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1789 ATGGATACCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAACAGCAAGCTTTCCGCCAAAAGACTCGTCGCCGGCTAATCATACTCCTTCTTTCCATTCTTCTTCTAATTGCTCTCGTCATCGGCGCTGTCGTCGGAATCGTCATTCATAAACGAAACTCTTCTTCTTCATCGCCCACCAGCTCAGCTCCTCCCACCGAGCTCACTCCCGCTGCCTCACTCAAAACTCTCTGTAGTGTTACTCAGTATCCCAGTTCCTGTCAGTCCTCTCTCCAAAACTCCAACACTACCGATCCGGTATTTCTCTTCAAGCTTTCTCTCCGAGTTGCCACCGATTCCCTCTCGAAACTTTCCGATTATACCTCTACTCTCAATTCCAATACTGGAGATCCGAAGGTTAAAGCCGCCATTGAAATCTGCCGGAGTGTTTTTGAAGATGCCATTGACACGCTAAACGACACCGTTTCATCCATGGAAGTGGATCACCATAGTGAGAAGTTCTTGTCGCCGTCTAGGATTGAAGATCTGAAAACCTGGCTGAGCACTACAATCACAGATCAAGAAACCTGCCTCGACGCAGTTCGAGATCTAAACCAGACGACGCTTCTCCAAAACTTGCAAACGGCAATGGCGAACTCTACCGAGTTTACTAGCAATAGTTTAGCGATTGTAACGAAAATCCTTGGACTGTTGGCTGATTTCAACATCCCTATCCACCGGAAACTGATGGGACTCCCGGAGTGGTTAAGCTCCGGCGATCGAAGGCTTCTGCAGGAGAACAATGTGACGGCGCATATGACGGTGTCGAAGGATGGGAAAGGGGACTACACAACGATCAAAGATGCCGTAGCGGCGGTGCCAAAGAAGAGCAAAGAAAGATTCATCATACATGTAAAAGAAGGAATATACGAAGAGAATGTGATTCTGGACAAGAACAAGTGGAACGTCATGATGTATGGAGATGGCAGAACCAAAACCATTGTTTCCGGCCACCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTTGCTGGCAAAGGGTTCATTGGGAAGGACATGGGGTTCATCAACACGGCCGGTCCAGCCAAGCACCAGGCTGTTGCCTTCCGGTCAGGCTCCGACCTTTCTGTGATGTCCGGATGTTCATTTGATGGCTATCAAGACACACTCTACGCCCATTCAAACCGTCAATTCTACCGAGACTGCGACATCACTGGCACCATCGACTTCATGTTCGGCAACGCCGCCGTGGTGTTCCAGAACTGCAACATCCGGCCTAGGCAGCCACTTCCCAACCAGTTTAACACCATCACAGCCCAAGGCAAAAAGGACATCAACCAAAACTCCGGCATTTCCATTCAGAAATGCACTTTTTCGGCCTACAACGACAGTCTAACCGCCCCCACTTACCTGGGTCGGCCATGGAAGGAGTTTTCCACCACGGTGATTATGCAGTCGGACATCGGAGCATTCCTGCAGCCCGTGGGGTGGAAGGAATGGGTCAGCGGGCAGGACCCACCCAGCAGCATATTTTATGGGGAGTATCAGAATACTGGGCCTGGATCCAGCGTGGACAAGAGGGTTAGATGGGCCGGTTACAAGCCCAGTCTTACGGACGCCGAGGCCGGAAAGTTCACTGTCAGGACCTTCCTCAACGGCGAGGATTGGTTGCCGGCCACCAGTGTAAAGTTTGATACATCCTTGTGA 1731 50.95 MDTVKSFKGYGKVDELEQQAFRQKTRRRLIILLLSILLLIALVIGAVVGIVIHKRNSSSSSPTSSAPPTELTPAASLKTLCSVTQYPSSCQSSLQNSNTTDPVFLFKLSLRVATDSLSKLSDYTSTLNSNTGDPKVKAAIEICRSVFEDAIDTLNDTVSSMEVDHHSEKFLSPSRIEDLKTWLSTTITDQETCLDAVRDLNQTTLLQNLQTAMANSTEFTSNSLAIVTKILGLLADFNIPIHRKLMGLPEWLSSGDRRLLQENNVTAHMTVSKDGKGDYTTIKDAVAAVPKKSKERFIIHVKEGIYEENVILDKNKWNVMMYGDGRTKTIVSGHLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMSGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFMFGNAAVVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFSAYNDSLTAPTYLGRPWKEFSTTVIMQSDIGAFLQPVGWKEWVSGQDPPSSIFYGEYQNTGPGSSVDKRVRWAGYKPSLTDAEAGKFTVRTFLNGEDWLPATSVKFDTSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33328082 33330266 + CrPI670011_07g017890.1 Cre07g1789 504370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1789 576 Gene3D - 262 576 IPR012334 -
Cre07g1789 576 PANTHER PECTINESTERASE 29 567 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre07g1789 576 Pfam Plant invertase/pectin methylesterase inhibitor 76 226 IPR006501 GO:0004857(InterPro)
Cre07g1789 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 231 IPR035513 -
Cre07g1789 576 NCBIfam pectinesterase inhibitor domain 57 230 IPR006501 GO:0004857(InterPro)
Cre07g1789 576 Pfam Pectinesterase 269 561 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre07g1789 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
Cre07g1789 576 SMART PMEI_2 72 226 IPR006501 GO:0004857(InterPro)
Cre07g1789 576 FunFam Pectinesterase 74 231 - -
Cre07g1789 576 FunFam Pectinesterase 262 576 - -
Cre07g1789 576 SUPERFAMILY Pectin lyase-like 266 572 IPR011050 -
Cre07g1789 576 CDD PMEI-like_3 79 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1573 Cre-Chr1:28844525 Cre07g1789 Cre-Chr7:33328082 4.70E-22 dispersed
Cre03g1104 Cre-Chr3:10553346 Cre07g1789 Cre-Chr7:33328082 7.00E-125 dispersed
Cre07g1789 Cre-Chr7:33328082 Cre10g0267 Cre-Chr10:1566735 3.20E-109 dispersed
Cre07g1788 Cre-Chr7:33318648 Cre07g1789 Cre-Chr7:33328082 1.70E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1789 - - - 0.0