Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1809 ATGGAGCCGTCTCTTGAACTTTCAGAAACGCCCGAGCAGATTATTCTACGATGGGACTCGGCCGCACCGGAGGAGGTGAAGGATAAGATGATTTTTGACTCTGACAGGGAAGAGATCGACCGTTATTTGCAGGCTGTTGATGAAATCCAGAGGTCTATGTCGTCGGCTACCATTTCGGACGATCAGAACAAAGTCGATTCCACTATGCAGATCGCCATGGCTAGGCTTGAGGATGAGTTCCGTCACATTCTTTCCAGTCATACCACTCCGATCGAGGTCGAGTCGCTTACTGATCCGAGTCCATCTTCTCGCTCCATGTCCACTAGTGGGAGTGGTGTGTTCGAGGATGAAAACGATGAGGAACCGGAGTTACAGGAAGTTCAGCTCGATTTAACTGGCAGTCCAAGTTTTGGGTCCAGCGGTCGATCGAGCTACCGGGCGACCAGCAGTATTCGTGAAATTGATCTGATACCTTCGGATGCGGTTATCGATCTACGAAGTATTGCTGAACGGATGATATCGGCGGGGTACCTGCGGGAGTGCATCCAAGTTTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCCGACGGCTCGGAATTGAGAAACTGAGCATTGGGGATATCCAGAGGCTGGATTGGAATGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCAGCAAAGGTGTCTATTAGGACTTTGTTTTCCAGCGAGAAGAAACTCTGCGAGCAAATTTTTTATGGCATAGGGACCGCCATAGACGATGCTTGTTTCATGGAGACTGTAAAAGGTCCTGTGACTCAGTTGTTCAATTTCGCCGAAGCGATCAGTATAAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCTTCACGGAGTTGATACCTGACATTGATATAATATTCGAATCAAAATCTGCGGAGTATATCCGAATTCAGGCGGCGGAGATATTGTCGCGGCTGGCGGAGGCCGTCAGAGGGACTTTATCGGAGTTTGAAAATGCGGTGCTGCGGGAGCCGTCGACGCATCCGGTTCCCGGCGGAACGCTTCATCCGTTGACAAGGTACGTAATGAACTATGTGAGTCTGATTTCGGACTACAAAGTGACCTTAGACGAGCTCATCGTGTCCAAACCATCGACGGGCTCGAGGTATTCGGCCGACCCCACAACCCCAGATATGGACTTTGGTGAGCTAGAGGGCAAAACGCCATTAGCGCTCCATCTTATATGGAGCATCGTGATTCTGCAGTTCAATTTGGAGGGGAAATCCAGGCACTACAAAGACCCTTCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTCAGAAGATAAAAGGATCCCCAGAGTTGCGAGAAATGATCGGAGACGTTTATCTAAAAAGGCTGACCGGGAAGTTTCGACAGGCGGCCACAAACTACGAGAGAACAACGTGGGTGAATGTGCTGTATTGCCTGCGAAACGAAGGGTTGAATGTGGGCGGGAGCTTGTCTTCCGGCCCCGCAAAGAGTCTTATTAGAGATAGATTCAAGACTTTCAACGCCATGTTTGAGGAGGTTCACAGGACACAATCAGCATGGTTGATACCAGATTCTCAGCTGAGGGAGGAGCTGCGCATATCCATAACTGAGAAGTTGATTCCAGCTTACAGGTCGTTTCTTGGCCTCCATGGCCACCACATAGAGAGTGGAAAACACCCCGAAAATTACATCAAGTACTCCGTCGACGAACTGGAAAATGCCATCTTGGATTTCTTTGAGGGTTGCTCGGCAACCCATAACTTGAGAAGGAGATCTCACTGA 1833 49.48 MEPSLELSETPEQIILRWDSAAPEEVKDKMIFDSDREEIDRYLQAVDEIQRSMSSATISDDQNKVDSTMQIAMARLEDEFRHILSSHTTPIEVESLTDPSPSSRSMSTSGSGVFEDENDEEPELQEVQLDLTGSPSFGSSGRSSYRATSSIREIDLIPSDAVIDLRSIAERMISAGYLRECIQVYGSVRKSTFDSSFRRLGIEKLSIGDIQRLDWNELETKIRRWIRAAKVSIRTLFSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDAFTELIPDIDIIFESKSAEYIRIQAAEILSRLAEAVRGTLSEFENAVLREPSTHPVPGGTLHPLTRYVMNYVSLISDYKVTLDELIVSKPSTGSRYSADPTTPDMDFGELEGKTPLALHLIWSIVILQFNLEGKSRHYKDPSLAHLFIMNNVHYIVQKIKGSPELREMIGDVYLKRLTGKFRQAATNYERTTWVNVLYCLRNEGLNVGGSLSSGPAKSLIRDRFKTFNAMFEEVHRTQSAWLIPDSQLREELRISITEKLIPAYRSFLGLHGHHIESGKHPENYIKYSVDELENAILDFFEGCSATHNLRRRSH 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33492035 33493867 + CrPI670011_07g018090.1 Cre07g1809 504390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1809 610 Gene3D Exocyst complex component Exo70 14 606 - -
Cre07g1809 610 MobiDBLite consensus disorder prediction 87 123 - -
Cre07g1809 610 SUPERFAMILY Cullin repeat-like 11 597 IPR016159 -
Cre07g1809 610 MobiDBLite consensus disorder prediction 88 113 - -
Cre07g1809 610 Pfam Exo70 exocyst complex subunit C-terminal 224 594 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cre07g1809 610 Pfam Exocyst complex component Exo70 N-terminal 12 85 - -
Cre07g1809 610 PANTHER EXOCYST COMPLEX PROTEIN EXO70 11 598 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1809 K07195 - - csv:101204229 1129.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1627 Cre-Chr3:32303281 Cre07g1809 Cre-Chr7:33492035 5.50E-121 dispersed
Cre05g2361 Cre-Chr5:35193826 Cre07g1809 Cre-Chr7:33492035 2.30E-103 dispersed
Cre07g1809 Cre-Chr7:33492035 Cre07g1981 Cre-Chr7:35220282 1.30E-103 dispersed
Cre07g1809 Cre-Chr7:33492035 Cre02g2353 Cre-Chr2:36944713 4.60E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g976 . . . . . . . . . Cmo17g00621 . . . Car14g01052 . . . . . . . . . . Cla07g01376 Cam07g1113 Cec07g1568 Cco07g1527 Clacu07g1457 Cmu07g1430 Cre07g1809 . . . . Lsi02g02843 . . . . . . . . . Bma09g01005 . . . Cmo14g01223 . Cma17g00639 . . . Cpe03g01013 . . . . . . . . . . . . . . Lsi07g00662 Csa03g02774 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2361 . 12 653 EXO70 exocyst subunit family AT5G03540 75.9 1.1e-283 972.6
Cre04g1139 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 2.8e-266 914.8
Cre04g1139 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 3.1e-299 1024.2
Cre05g2361 . 14 653 EXO70 exocyst subunit family AT5G52340 74.4 1.6e-271 932.2
Cre04g1139 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.4e-176 615.9
Cre05g2361 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 3.2e-165 578.9
Cre03g0365 . 1 623 EXO70 exocyst subunit family AT5G58430 67.0 1.4e-246 849.4
Cre03g0365 . 1 622 EXO70 exocyst subunit family AT1G07000 52.5 3.9e-174 608.6
Cre07g1891 . 60 673 EXO70 exocyst subunit family AT5G13150 53.6 1.0e-175 614.0
Cre09g1672 . 111 722 EXO70 exocyst subunit family AT5G13990 54.5 6.5e-189 657.9
Cre07g1809 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.1e-216 750.0
Cre07g1809 . 9 607 EXO70 exocyst subunit family AT1G54090 61.8 3.3e-208 721.8
Cre07g1809 . 9 608 EXO70 exocyst subunit family AT3G14090 64.2 2.0e-218 755.7
Cre03g1627 . 27 664 EXO70 exocyst subunit family AT5G50380 62.0 2.2e-226 782.3
Cre03g0668 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.2e-211 733.4
Cre08g1199 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 3.0e-295 1011.1
Cre02g1670 . 58 596 EXO70 exocyst subunit family AT3G55150 50.1 1.4e-145 513.8
Cre02g1670 . 31 596 EXO70 exocyst subunit family AT2G39380 50.1 5.1e-148 521.9
Cre10g2192 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.5e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007044 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 36