Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1863 ATGGCCGTCTCCAAATTCTCCGTCGCCGTCCTCCTCCTCCTCCTCTTAGCCTTTTTATTCCTTAACGGAGCCGAATCTCAGTTTCTTTGCAAAAGCTCCTCCTGCAATGGAGTTTCCTCGCCGGACGTTCGATTTCCGTTCCGACTGAAGAATTCGCAGGATTCTCGGTGTGGATACCAGCCAGATTTCGACCTGTTCTGCAACAATCGAAACCAGACGATTCTGAATCTCCCGAACGCCGGAGACCTCGTAGTGGAGATTATCGATTACAGGTTTCAGAGGTTGTGGATCAACGATCCGGATCAATGCTTTCCGAGACGAATACTAATAGACTCTTTCAATTTAGAGAACTCGCCGTTCATTTATAATTATCGATTCGATGAATTCACCGTTCTCAACTGCTCCTATTACGTCCAAACGCTACCGTTCGATCGCGTCCGGAAGATCAAATGTATGAGCGGCGGAAACCACACTGTAATCAATGTGCCAAACAGAGACCTAAAGGCGGTTACAGATTTCCTACCGTCGCCGTGTAAAGTGATTGCGACGAAGAAGCTTCCGTTAACAGGAATGGAGCTTGAAGAAGGAATGGTGGTGAGGTGGAGTGAGCCGGCTTGCGGAAACTGCGAGACGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGGTGAAGTCGTGTGTTTCAATCTTCCAAAAAGCGGAATTCCACGAGGTGCAAAATATGGGTTGATCATCGGTGTGGGAATCCCAGGAGTCCTGTTCATAATTGGGTTGGTCTGTTACATTTGTGGCAGGTTCAAGGCCTTTGCCCGACCCAATCGTCCAACATCACACCTTTCTCTTTCGTTGGGCCACCAACCCACTTTTACCAAAGCAGGCCTCGATGGTTCGACAATTGAATCATTCCCCAAGACAACACTGGGCCAGAGCAGACGACTTCCAAAGTCCAACGACACCACATGCGCCATATGCTTGTCAGAGTACCAGTCAAAGGAGACAATTAGAACCATACCAGATTGTGGTCACTTTTTCCATGCCAAATGCATTGATGAGTGGCTTAAATTGAACGCCACGTGTCCAGTCTGTCGGACCTCGCCCGAGGATTCCTCTTGCACCTCCACGCCTTCTCAATCCATGTCAGTGCCAACGTCGCCGCAATCAGTAGCATCATTGCCACATCATCACTAG 1191 48.95 MAVSKFSVAVLLLLLLAFLFLNGAESQFLCKSSSCNGVSSPDVRFPFRLKNSQDSRCGYQPDFDLFCNNRNQTILNLPNAGDLVVEIIDYRFQRLWINDPDQCFPRRILIDSFNLENSPFIYNYRFDEFTVLNCSYYVQTLPFDRVRKIKCMSGGNHTVINVPNRDLKAVTDFLPSPCKVIATKKLPLTGMELEEGMVVRWSEPACGNCETRGGDCGFKSNSSGEVVCFNLPKSGIPRGAKYGLIIGVGIPGVLFIIGLVCYICGRFKAFARPNRPTSHLSLSLGHQPTFTKAGLDGSTIESFPKTTLGQSRRLPKSNDTTCAICLSEYQSKETIRTIPDCGHFFHAKCIDEWLKLNATCPVCRTSPEDSSCTSTPSQSMSVPTSPQSVASLPHHH 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34022566 34026361 - CrPI670011_07g018630.1 Cre07g1863 504444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1863 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 368 IPR046948 -
Cre07g1863 396 MobiDBLite consensus disorder prediction 371 396 - -
Cre07g1863 396 CDD RING-H2_EL5-like 322 364 - -
Cre07g1863 396 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247(InterPro)
Cre07g1863 396 ProSiteProfiles Zinc finger RING-type profile. 322 364 IPR001841 -
Cre07g1863 396 SMART ring_2 322 363 IPR001841 -
Cre07g1863 396 Pfam Wall-associated receptor kinase C-terminal 190 229 IPR032872 -
Cre07g1863 396 Pfam Ring finger domain 321 364 IPR001841 -
Cre07g1863 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 369 IPR013083 -
Cre07g1863 396 SUPERFAMILY RING/U-box 316 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1863 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1863 Cre-Chr7:34022566 Cre08g1007 Cre-Chr8:23173289 6.40E-24 dispersed
Cre01g0328 Cre-Chr1:2710089 Cre07g1863 Cre-Chr7:34022566 3.40E-10 transposed
Cre05g0259 Cre-Chr5:2439753 Cre07g1863 Cre-Chr7:34022566 1.00E-10 transposed
Cre09g1874 Cre-Chr9:37331551 Cre07g1863 Cre-Chr7:34022566 6.80E-09 transposed
Cre10g1778 Cre-Chr10:32197245 Cre07g1863 Cre-Chr7:34022566 1.00E-09 transposed
Cre05g1071 Cre-Chr5:9968709 Cre07g1863 Cre-Chr7:34022566 2.10E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35