Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1880 ATGTCTTTAGAGCTTTGGTTTCTTGATCGAAAATCTTGCCTCGTTGTTTCCGGTGGACGGACTTTTGCTCTAAACTTCGTCGGAATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAATTCCCGGCAGAAGTGATGGACGTAGAAACGATGATGGAACAGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACCCAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGGCATGCAGCCACAGCCTGAGGAGCAGAGGCCTATGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCGCGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGA 588 47.11 MSLELWFLDRKSCLVVSGGRTFALNFVGMIASSLCNASAKFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKPISPFN 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34222132 34226994 + CrPI670011_07g018800.1 Cre07g1880 504461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1880 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983(InterPro)
Cre07g1880 195 Gene3D - 70 140 IPR036638 GO:0046983(InterPro)
Cre07g1880 195 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 166 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre07g1880 195 CDD bHLH_AtbHLH_like 79 130 IPR045239 -
Cre07g1880 195 FunFam Transcription factor bHLH113 family 72 148 - -
Cre07g1880 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 136 IPR036638 GO:0046983(InterPro)
Cre07g1880 195 SMART finulus 81 128 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1880 Cre-Chr7:34222132 Cre11g0574 Cre-Chr11:2862151 5.50E-21 dispersed
Cre07g1880 Cre-Chr7:34222132 Cre10g0804 Cre-Chr10:8059872 2.80E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1880 - - - 0.0