Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g1901 | ATGGTGTTTTCTCGAGCTTCCCAGCTCGTCGAAATGCAACGAGGAGACCGTTTTACACAGCCACCACCCGTCTCCGGTGGGTTTCCGCTGTTTCGCGACGTTCCAACAGACGACATGTCATTCGATGTGACGAGTAGTATGAAGGACGACGACATCGGCGTTCCGCTTAGTAAAAGATTTCATGTTGATGAGTCTGCTAGGAATGGAGTAGATGGGTTGGAGAAGAAGGAGGCTGTGATGGCGGGAACGACGACGACGACGACAACAGGACGGGGAGATTATGATAAGAGAAAGAAGATGAGAAGCCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGTTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTCCAAAGGCTAACTAGAGATGAAGGGGTGGTTGTGACAACTTATGAAGGCATTCATTCTCATCCTATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA | 588 | 44.56 | MVFSRASQLVEMQRGDRFTQPPPVSGGFPLFRDVPTDDMSFDVTSSMKDDDIGVPLSKRFHVDESARNGVDGLEKKEAVMAGTTTTTTTGRGDYDKRKKMRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 34464057 | 34468440 | + | CrPI670011_07g019010.1 | Cre07g1901 | 504482 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g1901 | 195 | Pfam | WRKY DNA -binding domain | 117 | 174 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre07g1901 | 195 | FunFam | WRKY transcription factor 57 | 102 | 176 | - | - | |
Cre07g1901 | 195 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 83 | 176 | IPR044810 | GO:0003700(InterPro) | |
Cre07g1901 | 195 | ProSiteProfiles | WRKY domain profile. | 111 | 176 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre07g1901 | 195 | SMART | WRKY_cls | 116 | 175 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre07g1901 | 195 | Gene3D | WRKY domain | 101 | 175 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre07g1901 | 195 | SUPERFAMILY | WRKY DNA-binding domain | 108 | 175 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0203 | Cre-Chr5:1981138 | Cre07g1901 | Cre-Chr7:34464057 | 1.30E-27 | dispersed | |
Cre05g1530 | Cre-Chr5:20665358 | Cre07g1901 | Cre-Chr7:34464057 | 1.60E-45 | dispersed | |
Cre07g1901 | Cre-Chr7:34464057 | Cre11g1198 | Cre-Chr11:9855583 | 1.10E-29 | dispersed | |
Cre07g1901 | Cre-Chr7:34464057 | Cre07g1140 | Cre-Chr7:23292946 | 2.20E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54097 | PF03106 | WRKY | 9.60E-26 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g1901 | - | - | - | 0.0 |