Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1901 ATGGTGTTTTCTCGAGCTTCCCAGCTCGTCGAAATGCAACGAGGAGACCGTTTTACACAGCCACCACCCGTCTCCGGTGGGTTTCCGCTGTTTCGCGACGTTCCAACAGACGACATGTCATTCGATGTGACGAGTAGTATGAAGGACGACGACATCGGCGTTCCGCTTAGTAAAAGATTTCATGTTGATGAGTCTGCTAGGAATGGAGTAGATGGGTTGGAGAAGAAGGAGGCTGTGATGGCGGGAACGACGACGACGACGACAACAGGACGGGGAGATTATGATAAGAGAAAGAAGATGAGAAGCCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGTTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTCCAAAGGCTAACTAGAGATGAAGGGGTGGTTGTGACAACTTATGAAGGCATTCATTCTCATCCTATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA 588 44.56 MVFSRASQLVEMQRGDRFTQPPPVSGGFPLFRDVPTDDMSFDVTSSMKDDDIGVPLSKRFHVDESARNGVDGLEKKEAVMAGTTTTTTTGRGDYDKRKKMRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY 195
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 34464057 34468440 + CrPI670011_07g019010.1 Cre07g1901 504482
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1901 195 Pfam WRKY DNA -binding domain 117 174 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1901 195 FunFam WRKY transcription factor 57 102 176 - -
Cre07g1901 195 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 83 176 IPR044810 GO:0003700(InterPro)
Cre07g1901 195 ProSiteProfiles WRKY domain profile. 111 176 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1901 195 SMART WRKY_cls 116 175 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1901 195 Gene3D WRKY domain 101 175 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre07g1901 195 SUPERFAMILY WRKY DNA-binding domain 108 175 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0203 Cre-Chr5:1981138 Cre07g1901 Cre-Chr7:34464057 1.30E-27 dispersed
Cre05g1530 Cre-Chr5:20665358 Cre07g1901 Cre-Chr7:34464057 1.60E-45 dispersed
Cre07g1901 Cre-Chr7:34464057 Cre11g1198 Cre-Chr11:9855583 1.10E-29 dispersed
Cre07g1901 Cre-Chr7:34464057 Cre07g1140 Cre-Chr7:23292946 2.20E-30 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54097 PF03106 WRKY 9.60E-26 CL0274 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1901 - - - 0.0