Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1906 ATGTCCACCGTCGTGGGTTCTGTGTCCACTAAGGATGTTAATTTCAATCCTGAAGTGGGAGAGGAAGAGGTGGTGAGGACAATGAACCAACCACAAGAAGAAGATCAGATCATCATCATCATCCAGGAAGATGATCAAGACAACATACTTAAGCTAAGGAGAGGGATGGATCTTGGTCCTCAATTCTCTCTCAAGGAACAACTCGACAAAGATAAGGATGATGAAAGCTTGAGGAAATGGAAAGAACAGTTGCTGGGTAGTGTGGATCTCTCAGCCATTGGAGCAGAAAGCAAAGAAGCAGAAGTGAAAATCCTGAGCCTAACAATCCAATGTCCAGGGAGGGAAGATCTTGTGCTGCCATTGCCATTTACCAAAACTTCCAAGAGTACCAGCCTCTTCTCCTTAAAGGAAGGCTCCCGGTACCGACTCCGGTTCAATTTCGTCGTTGCCGGGAATATCGTCTCCGGTCTCAAGTACACAAACACTGTCTGGAAGACTGGTGTTAAAGTGGATCATACAAAGAAAATGCTTGGAACTTTCAGTCCTCAGAGGGAGCCTTATGTGTATGAAATGGAAGAAGAAACTACACCCTCTGGAATGTTTGCAAGAGGGTCCTATTCTGCAAGGACAAAGTTTGTGGATGATGATGGGAAGTGCTATTTGGATGTTAGTTACCACTTTGAAATCCAAAAGAATTGGGCAACACCCTCTTGA 714 44.68 MSTVVGSVSTKDVNFNPEVGEEEVVRTMNQPQEEDQIIIIIQEDDQDNILKLRRGMDLGPQFSLKEQLDKDKDDESLRKWKEQLLGSVDLSAIGAESKEAEVKILSLTIQCPGREDLVLPLPFTKTSKSTSLFSLKEGSRYRLRFNFVVAGNIVSGLKYTNTVWKTGVKVDHTKKMLGTFSPQREPYVYEMEEETTPSGMFARGSYSARTKFVDDDGKCYLDVSYHFEIQKNWATPS 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34526015 34528348 - CrPI670011_07g019060.1 Cre07g1906 504487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1906 237 PRINTS RHO protein GDP dissociation inhibitor signature 170 185 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cre07g1906 237 PRINTS RHO protein GDP dissociation inhibitor signature 153 169 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cre07g1906 237 PRINTS RHO protein GDP dissociation inhibitor signature 212 229 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cre07g1906 237 PANTHER RHO GDP-DISSOCIATION INHIBITOR 40 233 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Cre07g1906 237 SUPERFAMILY E set domains 43 233 IPR014756 -
Cre07g1906 237 Pfam RHO protein GDP dissociation inhibitor 47 232 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cre07g1906 237 Gene3D Coagulation Factor XIII, subunit A, domain 1 54 235 IPR024792 -
Cre07g1906 237 FunFam Rho GDP-dissociation inhibitor 1 54 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1906 K12462 - - csv:101219208 339.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1768 Cre-Chr4:35668107 Cre07g1906 Cre-Chr7:34526015 6.60E-68 dispersed
Cre07g0486 Cre-Chr7:2680125 Cre07g1906 Cre-Chr7:34526015 9.20E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00750 . . . . . . . . . . . . . . . . . . Cla07g01471 Cam07g1571 Cec07g1670 Cco07g1631 Clacu07g1562 Cmu07g1530 Cre07g1906 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012234 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29